Query= MSMg01no372_d14.b1 MSMg01no372_d14.b1 CHROMAT_FILE:
MSMg01no372_d14.b1 PHD_FILE: MSMg01no372_d14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:55 2005
(538 letters)
>mm_chr5_5451449_5452386
Length = 938
Score = 971 bits (502), Expect = 0.0
Identities = 526/534 (98%)
Strand = Plus / Minus
Query: 5 gaattcaagtttatccagcgaagatggtaacatataactgtactttacataatgacttag 64
||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 738 gaattcaagttaataaagcgaagatgctaacatataactgtactttacataatgacttag 679
Query: 65 gataacttcagctataaccattttaaaacttactgtatattcaccgtcattttgaacagg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gataacttcagctataaccattttaaaacttactgtatattcaccgtcattttgaacagg 619
Query: 125 catatggccctttatgcaagacatggacaagttcccgtctacaactgggatgctccaggc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 catatggccctttatgcaagacatggacaagttcccgtctacaactgggatgctccaggc 559
Query: 185 aagtgctttcatccgtctgataggcgttcctaggctttttcagtgactgacagccagaac 244
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 558 aagtgctttcatccgtctgataggcgctcctaggctttttcagtgactgacagccagaac 499
Query: 245 tcatgctcttcctgtagaccacagagttaaaggtcatgtgggaaacacgacagcagattt 304
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tcatgctcttcctgcagaccacagagttaaaggtcatgtgggaaacacgacagcagattt 439
Query: 305 tatccccattttgaaatacacttctatatccttaatagttagactgggatttgcaaaata 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tatccccattttgaaatacacttctatatccttaatagttagactgggatttgcaaaata 379
Query: 365 gtaattctaataagaatcgggaacattggagtgggttattaaacattttcaattcacctg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gtaattctaataagaatcgggaacattggagtgggttattaaacattttcaattcacctg 319
Query: 425 gggatttcattacttctctttttccttccttcccacttaactgaggaaactcaaggagac 484
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gggatttaattacttctctttttccttccttcccacttaactgaggaaactcaaggagac 259
Query: 485 ctttgttttaaggaatcctgtggtcgttgcccttcatctcaccaagtactctag 538
||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 258 ctttgttttaaggaatcctgtggtcattgcccttcatctcaccaagtactctag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space: 489984
Effective search space used: 489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no372_d14.g1 MSMg01no372_d14.g1 CHROMAT_FILE:
MSMg01no372_d14.g1 PHD_FILE: MSMg01no372_d14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:10:55 2005
(495 letters)
>mm_chr5_5297638_5298532
Length = 895
Score = 843 bits (436), Expect = 0.0
Identities = 486/514 (94%), Gaps = 21/514 (4%)
Strand = Plus / Plus
Query: 1 atctcaaagagattgtcacaaaacctaatgaagatagaaactgatgccttcctaatgcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 atctcaaagagattgtcacaaaacctaatgaagatagaaactgatgccttcctaatgcca 243
Query: 61 ttagctgaagtaatatttcacattattaaaacacaccattatctaactagggaaactttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ttagctgaagtaatatttcacattattaaaacacaccattatctaactagggaaactttt 303
Query: 121 agacttagtcctaaattacctcaaaagttttatgaatgtgtatggtgtacatacacacac 180
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 304 agacttagtcctaaattacctcaaaagttttatgaatgtgtatggtgtac--acacacac 361
Query: 181 acac------acacacacacacatatacatatatatgtatatata---------tatac- 224
|||| | | | | ||| ||||| ||||||||||||||||| |||||
Sbjct: 362 acacatatatatatatatacatatatatatatatatgtatatatatatatatattataca 421
Query: 225 ---atatatacatatatatcacacaaatacacacatatatgtgaacaaaaagaatattaa 281
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tatatatatacatatatatcacacaaatacacacatatatgtgaacaaaaagaatattaa 481
Query: 282 tgtttataaatccctcattaattacacagaatcatctttaacatatagtgacaatggcct 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tgtttataaatccctcattaattacacagaatcatctttaacatatagtgacaatggcct 541
Query: 342 ctttctctccctaagagacacccatcctcaccattcaaaactggtctctgtagtagccta 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 ctttctctccctaagagacacccatcctcaccattcaaaactggtctctgtagtagccta 601
Query: 402 caaagcttgtgaatctatataactaaaactcatttaaaaaaataaaactgtttttaaatg 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 caaagcttgtgaatctatataactaaaactcatttaaaaaaataaaactgtttttaaatg 661
Query: 462 agattcaatgggctacataggaaatcataagcca 495
||||||||||| ||||||||||||||||||||||
Sbjct: 662 agattcaatggcctacataggaaatcataagcca 695
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space: 429225
Effective search space used: 429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
