BAC Information

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BAC

Clone NameMSMg01-372I10
Chromosome5 (Build37)
Map Location 150,820,127 - 150,820,367
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039964, Hmgb1, EG667410, LOC100040006, Uspl1, 2310047D07Rik, Alox5ap, 6330406I15Rik, 4930588N13Rik, LOC100040037, LOC100040062, 4930434E21Rik, Hsp110, EG433968, B3galtl, LOC100040089
Downstream geneRxfp2, LOC667470, Fry, LOC100042068, Gm5, XM_359419, Brca2, B230342M21Rik, BC037393, Aprin, LOC100040180, Kl, LOC667510
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372I10.T7 (MSMg01no372_i10.b1)MSMg01-372I10.TJ (MSMg01no372_i10.g1)
ACCAG478769AG478770
length743759
length of high quality
(start - end)
242 (67 - 308)240 (69 - 308)
definitionCHROMAT_FILE: MSMg01no372_i10.b1 PHD_FILE: MSMg01no372_i10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:17 2005CHROMAT_FILE: MSMg01no372_i10.g1 PHD_FILE: MSMg01no372_i10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATTTGCGGCGCTAAACGAATCACTATTCCCAAAGGATCCGCGGAATTCA
ACTTACCACNAGATATACATATTTTATTTATCACGTAATGAAGTTGGTTC
TTCTGCCATTTTAAGAAGTGAGTTAAATTTCTTTCAATGCTCTCCCTTGA
TACAGGACCAAGGAAAAGGAATCAGGAAAAGAAATGCTCGAAGATCTTCT
CTTAGGTTTAAAGAAACTTTTGTTGTTATTGTTGTTCACTGAACTTGAGG
TCTTTTAAGATAGCCTCCACAACTCCCTCCCCAACCTCCCCAAACAAAGA
AACTCCAACTTTTTAAAAAACAACCCCCCCCACTGTCACTTAAAAAACCC
CCTCCCTGTTGATTAAATGACCCTATATTTGTGTTCTGCCAAGATGACGG
ACGCTGAGATCTGCTGTTAAAGTCTAAAGCATAAACTCTAAAATGTAACT
AATCTACCATTAATTGGCTACCATAAGGTAATATTTGAAGTTTAAATATA
TCTCTCACTAGGATATATCTTCAGAGAAAGATTACGGTGTCTAGACTTCT
AAGAATTTAGTTTATAATTCTGCCTTATTATCCAACGGCCAAGCTTATTA
TCTTCTGAAACCGTAATAGTCAGCTTTTTTTTTCCCCCCATGCTCGCCCA
CACTTTTTTTTTTTAATGTTTACCCCTGTAACATTCCCAATTCCTCCTAC
ATTACTTTTCACCTCATATTTTCCCCCTGCCTCTTTACAGAAN
AATCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCATAATTGACTACAGTAGATGTCAGAACCAG
CTCCCAGCCAGGAGTCTACCTGTCCTGGAACGGGTGACCACGTCAGGACA
CCATCCCGCCTGAAGTCTTCAGTCATGCAGATAAAGCATCCCTAACGCCT
CAGAGCGAGCCAATGGGAAGCATCTACCCCAAAATGTTTACAAGGTCCCT
GTCCACAAGAAATAAAGTGCATGAGTTATTTCACTAAGAATCGTCTGAGT
TCTTTTATTTGTTTGTCTTGCTAGCTCGGTGGGATTTATATTAATAGAGA
ATGCTTCGGTGTTTGGGATTCTGGCTCCTTCTTGGAGTCCTGAGAAGAAT
GGGAGGCCGAGTTTGTTTTTGCTACAGAATTGAGAGCATCGGATAGCTGT
GGCCTGGTGGAGTTTTGGCGGCGTCTTTGCAGTTAGCTTTGCGCTGTTTC
TTTCATTCTTCCTCTTTTCCCCGGTCCTATTTTATTCCCTCCTCTCCCCC
TCTTTCCTTTACCTTTTAACTCTTCATACTTTGATTTTCTCGTTCCAATA
CCCCCCTTTTTATCCTTCCTCTTTCCCCTCCTTCTTTCTCCCTTTTTTTT
TCTTTATTTCTACTCACCCTCCTTCTTTTTTCTCCCTCTATTCCCTCTCT
TCCTTACTCCCTTTTATCCCCCTCTATTTCCATTTTCCATTTATTCCATT
ACCCCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_i10.b1 MSMg01no372_i10.b1 CHROMAT_FILE:
MSMg01no372_i10.b1 PHD_FILE: MSMg01no372_i10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:17 2005
         (242 letters)



>mm_chr5_150819925_150820567
          Length = 643

 Score =  451 bits (233), Expect = e-131
 Identities = 239/241 (99%), Gaps = 1/241 (0%)
 Strand = Plus / Minus

                                                                       
Query: 3   atattttatttatcacgtaatgaagttggttcttctgccattttaagaagtgagttaaat 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 443 atattttatttatcacgtaatgaagttggttcttctgccattttaagaagtgacttaaat 384

                                                                       
Query: 63  ttctttcaatgctctcccttgatacaggacc-aaggaaaaggaatcaggaaaagaaatgc 121
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 383 ttctttcaatgctctcccttgatacaggaccaaaggaaaaggaatcaggaaaagaaatgc 324

                                                                       
Query: 122 tcgaagatcttctcttaggtttaaagaaacttttgttgttattgttgttcactgaacttg 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tcgaagatcttctcttaggtttaaagaaacttttgttgttattgttgttcactgaacttg 264

                                                                       
Query: 182 aggtcttttaagatagcctccacaactccctccccaacctccccaaacaaagaaactcca 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aggtcttttaagatagcctccacaactccctccccaacctccccaaacaaagaaactcca 204

            
Query: 242 a 242
           |
Sbjct: 203 a 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 643
Length adjustment: 9
Effective length of query: 233
Effective length of database: 634
Effective search space:   147722
Effective search space used:   147722
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)