Query= MSMg01no372_k08.b1 MSMg01no372_k08.b1 CHROMAT_FILE:
MSMg01no372_k08.b1 PHD_FILE: MSMg01no372_k08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:26 2005
(395 letters)
>mm_chr5_84622359_84623153
Length = 795
Score = 719 bits (372), Expect = 0.0
Identities = 387/392 (98%)
Strand = Plus / Plus
Query: 4 ggaattctctgatatccatgtggagaacaatagatcggaaagaagtggagggcagtgcgt 63
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctgataaccatgtggagaacaatagatcggaaagaagtggagggcagtgcgt 263
Query: 64 ttgagtagaaaaagtgtctctcagagaagaaatcaggcacaggagatgcagacagtggag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttgagtagaaaaagtgtctctcagagaagaaatcaggcacaggagatgcagacagtggag 323
Query: 124 gcagaggtggacagatgattaacaatgaacaatatcaaccaaccagaactcctagagctc 183
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 324 gcagaggtggacagatgattaacaatgaacaatatcaaccaacgagaactcctagagctc 383
Query: 184 ccagagactaaactatcaaccaaagagtacacagccacatatgtagcagagaacggccta 243
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 384 ccagagactaaactatcaaccaaagaatacacagccacatatgtagcagagaacggccta 443
Query: 244 gtcagccatttatgggaggggaggctcctggtactgtgaaggttctatgccccagtatag 303
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gtcggccatttatgggaggggaggctcctggtactgtgaaggttctatgccccagtatag 503
Query: 304 gggaatgccacggccaggaatcaggagtgagtgggttggtgagcagggagaggggaaagg 363
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 504 gggaatgccacggccaggaatcaggagtgagtggtttggtgagcagggagaggggaaagg 563
Query: 364 gcatagggggtttttggaggggaaaccggaaa 395
||||||||||||||||||||||||||||||||
Sbjct: 564 gcatagggggtttttggaggggaaaccggaaa 595
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 795
Length adjustment: 9
Effective length of query: 386
Effective length of database: 786
Effective search space: 303396
Effective search space used: 303396
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no372_k08.g1 MSMg01no372_k08.g1 CHROMAT_FILE:
MSMg01no372_k08.g1 PHD_FILE: MSMg01no372_k08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:26 2005
(497 letters)
>mm_chr5_84788712_84789608
Length = 897
Score = 897 bits (464), Expect = 0.0
Identities = 476/480 (99%), Gaps = 2/480 (0%)
Strand = Plus / Minus
Query: 1 tttcaaaatacttaataaggaaatgttttccccatatttagtaacattatgtgaaaatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 tttcaaaatacttaataaggaaatgttttccccatatttagtaacattatgtgaaaatta 419
Query: 61 ttcaaaaaagtacggtttgatttaaattttaaaagaacctatggggctgaacagatggct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ttcaaaaaagtacggtttgatttaaattttaaaagaacctatggggctgaacagatggct 359
Query: 121 ctgtgcttaaagccactatgtgcagttgccaaacccaagcctcagctcatagacttctgt 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ctgtgcttaaaaccactatgtgcagttgccaaacccaagcctcagctcatagacttctgt 299
Query: 181 atgtcttcttccatgggacttcaccctttttcttatttatgtggctccttcatatgagta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 atgtcttcttccatgggacttcaccctttttcttatttatgtggctccttcatatgagta 239
Query: 241 atagacttatatacactcatccacacaagtatttacacataaaattaaaataaatagtat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 atagacttatatacactcatccacacaagtatttacacataaaattaaaataaatagtat 179
Query: 301 tagaaaaaaaaataccctagttctcagttcaacttagacttccctgaattaggagaaata 360
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 tagaaaaaaaaa-a-cctagttctcagttcaacttagacttccctgaattaggagaaata 121
Query: 361 tctagtacaggaatattttaaacaacattttaataacatgtagtccagcatctaaaaaac 420
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 tcaagtacaggaatattttaaacaacattttaataacatgtagtccagcatctaaaaaac 61
Query: 421 attttcctacaaatacttggaattttgcaaaagaatacccagcaaccttctcctgggaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 attttcctacaaatacttggaattttgcaaaagaatacccagcaaccttctcctgggaat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space: 431969
Effective search space used: 431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
