Query= MSMg01no372_p16.b1 MSMg01no372_p16.b1 CHROMAT_FILE:
MSMg01no372_p16.b1 PHD_FILE: MSMg01no372_p16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:50 2005
(571 letters)
>mm_chr5_51169366_51170334
Length = 969
Score = 1048 bits (542), Expect = 0.0
Identities = 560/566 (98%), Gaps = 4/566 (0%)
Strand = Plus / Minus
Query: 7 gaattctttc-ctatgcatttatagaatattttgctagagatttttgtatatttgttgta 65
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 gaattctttcac-atgcatttatagaatattttgctagagatttttgtatatttgttgta 711
Query: 66 tgagtatacaaagcatctagtcttaaagttgtccactaggataaaaatgattttaatgtg 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 tgagtatacaaagcatctagtcttaaagttgtccactaggataaaaatgattttaatgtg 651
Query: 126 gttagctttgaacacaaggcaatgaagttcaaaagttcatttgcaccacagaacatacac 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 gttagctttgaacacaaggcaatgaagttcaaaagttcatttgcaccacagaacatacac 591
Query: 186 cttgtaaaccaattacattgtttctgtattgacacactttttgtaatttcccatctcttc 245
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 590 cttgtaaaccaattacattg-ttctgtattgacacactttttgtaatttcccatctcttc 532
Query: 246 tctctgacatccttgccagcaaagatgctctgtggcttctccgcgatcctatgcccggat 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 tctctgacatccttgccagcaaagatgctctgtggcttctccgcgatcctatgcccggat 472
Query: 306 gagcacatcatcaaaagctcagggaatatctgtgagttgaataaatgatttgacaaatga 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 gagcacatcatcaaaagctcagggaatatctgtgagttgaataaatgatttgacaaatga 412
Query: 366 attaatcaggatctcaagaaagctcttagtgtgtaagcatctccctttggcccaagcgtg 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 attaatcaggatctcaagaaagctcttagtgtgtaagcatctccctttggcccaagcgtg 352
Query: 426 tctccagagtagccctcagtgaacagaggcattttatgcaaatacacttgagaaaaaaaa 485
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 351 tctccagagtagccctcagtgaacagaggcattttatgcaaatacacttgag-aaaaaaa 293
Query: 486 aatatttcagcacttaccaaatcacctcatcagatgacctcaaaatttgcctttgttcta 545
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 attgtttcagcacttaccaaatcacctcatcagatgacctcaaaatttgcctttgttcta 233
Query: 546 atttctacctaaacgaaagatcattt 571
||||||||||||||||||||||||||
Sbjct: 232 atttctacctaaacgaaagatcattt 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 969
Length adjustment: 10
Effective length of query: 561
Effective length of database: 959
Effective search space: 537999
Effective search space used: 537999
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no372_p16.g1 MSMg01no372_p16.g1 CHROMAT_FILE:
MSMg01no372_p16.g1 PHD_FILE: MSMg01no372_p16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:51 2005
(489 letters)
>mm_chr5_51014888_51015775
Length = 888
Score = 884 bits (457), Expect = 0.0
Identities = 481/491 (97%), Gaps = 5/491 (1%)
Strand = Plus / Plus
Query: 1 ctagctagtgacttaatttgagtaccgatgttaatattttataaggaaatcagcattttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctagctagtgacttaatttgagtaccgatgttaatattttataaggaaatcagcattttt 260
Query: 61 cttttaaatacctactttaaaggctttattgtagtgccatggatttatgatatcttgaag 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 cttttaaatacctactttaaaggctttattgtagtgccatggatttatgatatcttgagg 320
Query: 121 catagatgttttctgttggaacactgttcacattcttgcacaagtcaactggctaataga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catagatgttttctgttggaacactgttcacattcttgcacaagtcaactggctaataga 380
Query: 181 attcagtatacagaactttctgtctgaagtatttggcattacaatagatgggtagcaaat 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 attcagtatacagaactttctgtctggagtatttggcattacaatagatgggtagcaaat 440
Query: 241 tttattta--tatatttcagaattataactgtctaaaaacacatctgtaattatcaagcc 298
|||| | |||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 441 ttta---aaatatatttcagaattataactgtctgaaaacacatctgtaattgtcaagcc 497
Query: 299 ctcctaatttattaggacataaagcactctcgccttaagatttttagttttgtttaaata 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ctcctaatttattaggacataaagcactctcgccttaagatttttagttttgtttaaata 557
Query: 359 ttttgatacatatcattcaaatttgtattttatgtccctcagaatttgaggtcctgctct 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ttttgatacatatcattcaaatttgtattttatgtccctcagaatttgaggtcctgctct 617
Query: 419 agaaaaataatgtggaaacctacaggatataggctagatataatttgatgcctttaatta 478
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 618 agaaaaataatgtggaaacctacaggatacaggctagatataatttgatgcctttaatta 677
Query: 479 gcattactaca 489
|||||||||||
Sbjct: 678 gcattactaca 688
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 888
Length adjustment: 10
Effective length of query: 479
Effective length of database: 878
Effective search space: 420562
Effective search space used: 420562
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
