BAC Information

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BAC

Clone NameMSMg01-372P17
Chromosome5 (Build37)
Map Location 111,359,769 - 111,531,793
singlet/doubletdoublet
Overlap geneTtc28
Upstream geneLOC667243, Plcxd1, Gtpbp6, LOC675812, Chfr, Golga3, D5Ertd585e, Pgam5, Pxmp2, Pole, P2rx2, Gm1679, 2410025L10Rik, Galnt9, Noc4l, Ddx51, Ep400, Pus1, Ulk1, Hscb, Chek2
Downstream genePitpnb, Mn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372P17.T7 (MSMg01no372_p17.b1)MSMg01-372P17.TJ (MSMg01no372_p17.g1)
ACCAG479118AG479119
length756776
length of high quality
(start - end)		528 (38 - 565)452 (68 - 519)
definitionCHROMAT_FILE: MSMg01no372_p17.b1 PHD_FILE: MSMg01no372_p17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:51 2005CHROMAT_FILE: MSMg01no372_p17.g1 PHD_FILE: MSMg01no372_p17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,531,272 - 111,531,793)(111,359,769 - 111,360,220)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAG
GCACTACACCAGCACTTCATGTATGTTATACATGACCCTACACAACTGTG
CAGCCATAAAGCAGGACAGGGAAGATCAGTCACCATGACCCGAATAGAAC
AGAAGAAAGGAAGGTGGCCCCACAGCCAGGAAGTGCAGCTACGACTCAGG
GCTGGGTACACCTGAAACTCAAGTCCACCCTCTGCCCAAGAGCAGACAGG
AAGGCTTTCTCACTGTGCCAGCCATGCTAGATATCAACTTTCAAAGAAAG
TCACAGTTGATACTGCAAGTACGGTCTTCACTGTGACATTTGGCTCTTCC
CGTAAATTCATCAGGCTTCTCTCAAACAAGGAAACAAAATGACGGAGGGA
CAATCGTAACACTAGATCACAAACAAAGCTCGTGTGAGGTAGCGTGTCAC
CAGACGCAGTTCCCTGCCAGTTTCCCTGTGAGTTTCATGGCACACTTGAA
GGGACGTAGAACGACGCACCTGAGCAGGCTGCTTGCTCCTGACGTCAGAG
TCAAGACCTTCTCTCTTTGTACATTCCCCAGGACTATGCAATTGACATTC
AGTACCTGATCAGGCATGACAGTCGCAATGACTGAACTTCCGGAGATGTA
AAGGGCCCCCGACGCTTCCTGCACAGAAAAAGGGGTTCTTGCATGGGTTG
TCAAGGATGTTCCTAACTCCCCGGCCTTGGGCTTCTCGGCCAGACCCCAT
TATGCT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAGCATTTGTAAAGCTGGAAGTAGTGGTGTGCTC
ATGGAATCTCAGCACTTGAGAGGCTGAGGCAGGTAGATTGCTATGAATTT
AAGGAAAGCCCAGACTACATAGCATGCACTTATCTCTTGAGCAGCAGCAG
GGCTTTGGAGAGGACTTGAGTGGGTAAAGCTTGCTCAGCTTTCGTCCCCA
GGATGCAGCATGTCTATAGTCCCAGTGCATTCCTGAAGTGAAGGAAGAGT
CTGAGGCAGCCTCAGCCTCCGAGGAGGAATTCTCAACCTCCCTGCACTGC
GACCGTTTAATACAGGACCTCATGTCACGGTCATCCCCAACCCGGAAATT
ATTTTCCCTTCCACTTCATAGCTGTTAGGAATTGTAATGTAAGTATCTGA
TATGTGACCCCTTGACTGCCGCCTTANAGTGTTGTGGGCCAGCCTTCATG
ATGTGTGCAGTGGTAAACTACAAAGAGACCAAGACCAACACCTAGGGCCC
TGACCACTGAATACACACACACCAGGCCATATGTATTATTCTCACATGTG
AATGAACATGTACCTATTCCGGCATGCCCACCTATTCCCCACCTTTTTGG
CACCCCCCCCCCCAACCCAAAAAGGCCAACGAAATTTATTATTTTCTCCA
CAGCTCTTTGGGGGGGACAATTTCTCTTTTCTAACCACAATGGGGTTTTT
TTTTTTCCCCTCCAGTTCCCTTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_p17.b1 MSMg01no372_p17.b1 CHROMAT_FILE:
MSMg01no372_p17.b1 PHD_FILE: MSMg01no372_p17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:51 2005
         (528 letters)



>mm_chr5_111531066_111531993
          Length = 928

 Score =  940 bits (486), Expect = 0.0
 Identities = 513/522 (98%)
 Strand = Plus / Minus

                                                                       
Query: 7   attccaggcactacaccagcacttcatgtatgttatacatgaccctacacaactgtgcag 66
           ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||
Sbjct: 728 attccaggcactacaccagcacttcacatatgttatacatgaccctacacaactgtgcag 669

                                                                       
Query: 67  ccataaagcaggacagggaagatcagtcaccatgacccgaatagaacagaagaaaggaag 126
            ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 668 tcataaagcaggacagggaagatcagtcaccatgccccgaatagaacagaagaaaggaag 609

                                                                       
Query: 127 gtggccccacagccaggaagtgcagctacgactcagggctgggtacacctgaaactcaag 186
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gtggccccatagccaggaagtgcagctacgactcagggctgggtacacctgaaactcaag 549

                                                                       
Query: 187 tccaccctctgcccaagagcagacaggaaggctttctcactgtgccagccatgctagata 246
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cccaccctctgcccaagagcagacaggaaggctttctcactgtgccagccatgctagata 489

                                                                       
Query: 247 tcaactttcaaagaaagtcacagttgatactgcaagtacggtcttcactgtgacatttgg 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tcaactttcaaagaaagtcacagttgatactgcaagtacggtcttcactgtgacatttgg 429

                                                                       
Query: 307 ctcttcccgtaaattcatcaggcttctctcaaacaaggaaacaaaatgacggagggacaa 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ctcttcccgtaaattcatcaggcttctctcaaacaaggaaacaaaatgacggagggacaa 369

                                                                       
Query: 367 tcgtaacactagatcacaaacaaagctcgtgtgaggtagcgtgtcaccagacgcagttcc 426
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 368 tcgtaacactagatcacaaacaaagctcgtgtgagctagcgtgtcaccagacgcagttcc 309

                                                                       
Query: 427 ctgccagtttccctgtgagtttcatggcacacttgaagggacgtagaacgacgcacctga 486
           |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 308 ctgccagtctccctgtgagtttcatggcacacttgaagggacgtagaacgacacacctga 249

                                                     
Query: 487 gcaggctgcttgctcctgacgtcagagtcaagaccttctctc 528
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 gcaggctgcttgctcctgacgtcagagtcaagaccttctctc 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space:   475524
Effective search space used:   475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no372_p17.g1 MSMg01no372_p17.g1 CHROMAT_FILE:
MSMg01no372_p17.g1 PHD_FILE: MSMg01no372_p17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:51 2005
         (452 letters)



>mm_chr5_111359569_111360420
          Length = 852

 Score =  837 bits (433), Expect = 0.0
 Identities = 447/452 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcatttgtaaagctggaagtagtggtgtgctcatggaatctcagcacttgagaggctga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcatttgtaaagctggaagtagtggtgtgctcatggaatctcagcacttgagaggctga 260

                                                                       
Query: 61  ggcaggtagattgctatgaatttaaggaaagcccagactacatagcatgcacttatctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcaggtagattgctatgaatttaaggaaagcccagactacatagcatgcacttatctct 320

                                                                       
Query: 121 tgagcagcagcagggctttggagaggacttgagtgggtaaagcttgctcagctttcgtcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgagcagcagcagggctttggagaggacttgagtgggtaaagcttgctcagctttcgtcc 380

                                                                       
Query: 181 ccaggatgcagcatgtctatagtcccagtgcattcctgaagtgaaggaagagtctgaggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaggatgcagcatgtctatagtcccagtgcattcctgaagtgaaggaagagtctgaggc 440

                                                                       
Query: 241 agcctcagcctccgaggaggaattctcaacctccctgcactgcgaccgtttaatacagga 300
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcctcagcctccgaggagggattctcaacctccctgcactgcgaccgtttaatacagga 500

                                                                       
Query: 301 cctcatgtcacggtcatccccaacccggaaattattttcccttccacttcatagctgtta 360
           ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 501 cctcatgtcacggtcatccccaacctggaaattattttcccttctacttcatagctgtta 560

                                                                       
Query: 361 ggaattgtaatgtaagtatctgatatgtgaccccttgactgccgccttanagtgttgtgg 420
           |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 561 ggaattgtaatgtaagtatctgatatgtgaccccatgactgccgccttagagtgttgtgg 620

                                           
Query: 421 gccagccttcatgatgtgtgcagtggtaaact 452
           ||||||||||||||||||||||||||||||||
Sbjct: 621 gccagccttcatgatgtgtgcagtggtaaact 652


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space:   372164
Effective search space used:   372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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