BAC Information

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BAC

Clone NameMSMg01-373D16
Chromosome5 (Build37)
Map Location 115,647,367 - 115,647,725
singlet/doubletsinglet
Overlap genenone
Upstream geneAcacb, Foxn4, Myo1h, Kctd10, Ube3b, Mmab, Mvk, BC057022, Trpv4, Gltp, Tchp, Git2, 4930515G01Rik, Ankrd13a, 1500011B03Rik, 2610524H06Rik, LOC664895, 4930519G04Rik, Oasl2, Oasl1, 2210016L21Rik, Tcf1, Sppl3, Acads, AA407659, 2410014A08Rik, Cabp1
Downstream genePop5, Rnf10, Coq5, Dynll1, Sfrs9, 2010003O18Rik, Triap1, Cox6a1, Msi1, Pla2g1b, Sirt4, LOC638021, Pxn, Arbp, Gcn1l1, LOC100042199, Rab35, Ccdc64, LOC665032, Cit, Prkab1, LOC545798, Ccdc60
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373D16.T7 (MSMg01no373_d16.b1)MSMg01-373D16.TJ (MSMg01no373_d16.g1)
ACCAG479308AG479309
length709712
length of high quality
(start - end)		492 (44 - 535)245 (56 - 300)
definitionCHROMAT_FILE: MSMg01no373_d16.b1 PHD_FILE: MSMg01no373_d16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:09 2005CHROMAT_FILE: MSMg01no373_d16.g1 PHD_FILE: MSMg01no373_d16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTACTATATCCAGAGGATCCGCGGAATTCACTTGCCCTTCAAATGTCAC
TTCTCTCTGCAGCCTTCTCTGGCTCCCTGAAGGTTTTCTTTTGGGCTTCC
ACAGAACCCAGCCTGTAATCCTCTAATTGCCTGGTTCCCTTATATTACTA
CAGTAGTCTTTCTCCTCGATTTGAGATATGGGATATCTTAAATGTATATA
TATATCCCTGAAGAACAAAGAATGGGTCTTACATCTTGTTTGTCTGCCTT
TGAGTCAGGGTTTCTCTTAACTCAGGCTGGTCTTGAACTCTATGTGGCCA
AGGATGACCTTGAACCCCAGGTCCTCCAAGGTCAGCCTCCAGAGTGCTGG
GATTTTGGGGTACCTGCCACCCTGCCTGGCTGGACCTTACCATTCATTCT
TTTTTTGTTTTGTTTTTTTGTTTTGTTTTTTTCGAGACAGGGTTTCTCTG
TGTAGCCTTGGCTGTCCTGAAACTCACTCTGTAGACCAGGCTGGCCTCGA
ACTCTGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGAATAAAGGCGT
GCGCCACCATGCCCAGCTACCATTCATTCTTTTTGTCTGAGACGGGGAGG
CAGGGTTTCTCCGGATAGCCCTGGGTGTCCTGGAATTCATTTTGTAGACC
AGGCTGGGCTCCAAATTAAAAATTCATCCGGGTTTTGTCTCCCAAGTGCT
GCGGATAAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXAGTACCTTTGGAAGAGCAGTCGGTGCTCTTACCCACTGAACCATC
TCACCAGCCCTATCACTGTTTTTCTTAACTTGAATTTCTTACCAGTTCCC
ATTTGATACCCAACAGTCCATTAAGATACTCTCTGCCAGCTAGACCATAG
CCACACCTTTAAACCCAGCACTTGGGAGGCTGAGGCAGGCAGATCTCTGA
GTTCAAGGCCAGACTGAAGTACAGAGCAAATTCCAGGACAGCCAGGGCTG
TTTTGTTAGACCCTTGTCTTGAGAAGGGGTTCTGAGGGGGTGTGCAGGGA
GGGGTCTTTGCAGAGGTCTCCATTCCATGTGAAGCAAACAATACTGAGTA
AAACTGTGCTGATCTCTTTATATGATGTACTCCTTTACCCAGTAACAGCT
CTCACAGACTGTGGCTGTCATCCCCAGGTCACAGATGGAAAGGATGACAG
ATAAAGAGGTTAGGGCGTCAGCCGAGAGAGATCTCAGATTATAAGTCAGC
AGAGCCGACCCTGCGGTCTCATGACATACCTGCCATCCTAGATCCTTCCT
TTTTTTTCTCCATTTAAAATTTCTTTCACGGGGTACCTCTTTCTTGATGT
TTAACTCCGGGAGGGTCCCAGGCCCCTTCCTTTGGCCTACTTCCCCCTGT
TGTGGAAAAGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_d16.b1 MSMg01no373_d16.b1 CHROMAT_FILE:
MSMg01no373_d16.b1 PHD_FILE: MSMg01no373_d16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:09 2005
         (492 letters)



>mm_chr5_115647328_115648212
          Length = 885

 Score =  617 bits (319), Expect = 0.0
 Identities = 353/369 (95%), Gaps = 10/369 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgtcacttctctctgcagccttctctggctccctgaaggttttcttttgggcttccaca 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 398 atgtcacttctctctgcagccttctctggctccctgaaggttctcttttgggcttccaca 339

                                                                       
Query: 61  gaacccagcctgtaatcctctaattgcctggttcccttatattactacagtagtctttct 120
           |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 338 gaacccagcctgtaattctctaattgcctggttcccttatattactacggtagtctttct 279

                                                                       
Query: 121 cctcgatttgagatatgggatatcttaaatgtatatatatatccctgaagaacaaagaat 180
           ||||||||||||||||    ||   || || |||||||||||||||||||||||||||||
Sbjct: 278 cctcgatttgagatat----ta---tatatatatatatatatccctgaagaacaaagaat 226

                                                                       
Query: 181 gggtcttacatcttgtttgtctgcctttgagtcagggtttctcttaactcaggctggtct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 gggtcttacatcttgtttgtctgcctttgagtcagggtttctcttaactcaggctggtct 166

                                                                       
Query: 241 tgaactctatgtggccaaggatgaccttgaaccccaggtcctccaaggtcagcctccaga 300
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 165 tgaactctatgtggccaaggatgaccttgatccccaggtcctccaaggtcagcctccaga 106

                                                                       
Query: 301 gtgctgggattttggggtacctgccaccctgcctggctggaccttaccattcattctttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 gtgctgggattttggggtacctgccaccctgcctggctggaccttaccattcattctttt 46

                    
Query: 361 tttgttttg 369
              ||||||
Sbjct: 45  ---gttttg 40


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 885
Length adjustment: 10
Effective length of query: 482
Effective length of database: 875
Effective search space:   421750
Effective search space used:   421750
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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