Query= MSMg01no373_f08.b1 MSMg01no373_f08.b1 CHROMAT_FILE:
MSMg01no373_f08.b1 PHD_FILE: MSMg01no373_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:16 2005
(554 letters)
>mm_chr5_49546634_49547587
Length = 954
Score = 888 bits (459), Expect = 0.0
Identities = 521/551 (94%), Gaps = 19/551 (3%)
Strand = Plus / Minus
Query: 4 ggaattcaagaaaattactaatgaaaaataaacaaataacttttaaaacttactatttta 63
|||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 ggaattcaagaa-------aatgaaaaataaacaaataacttttaaaacttactatttta 491
Query: 64 cattttttgataaattcctttcccgacacataaaagtcatctctggaatagattttcagg 123
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 490 cattttttgataaattcctttcccgatacataaaagtcatctctggaatagattttcagg 431
Query: 124 aattgatttgggcagaattaaaattaagtctgagtgtattaagctatgttaggatttaag 183
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct: 430 aattgatttgggcagaattaaaattatgtctgagtgtattaagctatgttagcatttaag 371
Query: 184 ttttttggagtcagtgtacaagtcatgtatacctaggactactctttgcatatcaaatgt 243
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 370 ttttttggagtcagtgtacaagtcatgtatacctaggactactctttgcatttcaaatgt 311
Query: 244 ttc-ttttttaaaaacagtactaagataaatttatttttatatgtgaataagagtcttgc 302
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ttctttttttaaaaa-agtactaagataaatttatttttatatgtgaataagagtcttgc 252
Query: 303 tcaaagatatgactgtaataatgtggattctggaactgatactatagacagttgtgaata 362
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tcaaaggtatgactgtaataatgtggattctggaactgatactatagacagttgtgaata 192
Query: 363 cccatatgggtgctagaacttgtacccaagtcttctgtaagaacaaggactcttcactat 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 cccatatgggtgctagaacttgtacccaagtcttctgtaagaacaaggactcttcactat 132
Query: 423 tgagtcttctaactccaaagtagtcatagaataga---------gcaacaaaatagctaa 473
|||||||||| |||||||| |||||||||| |||| ||||||||||||||||
Sbjct: 131 tgagtcttctgactccaaaatagtcatagagtagatttttttcagcaacaaaatagctaa 72
Query: 474 aacttaataaatagcataagtccactaaacctcaattttatgcttttt-aaccaaataga 532
|||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 71 aacttaataaatagtataagtccactaaacctcaattttatgtttttttaaccaaataga 12
Query: 533 tgtgtactggt 543
||||||||||
Sbjct: 11 agtgtactggt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space: 513536
Effective search space used: 513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no373_f08.g1 MSMg01no373_f08.g1 CHROMAT_FILE:
MSMg01no373_f08.g1 PHD_FILE: MSMg01no373_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:16 2005
(520 letters)
>mm_chr5_49396508_49397426
Length = 919
Score = 982 bits (508), Expect = 0.0
Identities = 517/520 (99%), Gaps = 1/520 (0%)
Strand = Plus / Plus
Query: 1 tccctgtgactagtgctagccttcaaaaaataaaaatcaggtgtctctatgctccaatat 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 tccctgtgactagtgctagccttcaaaaa-taaaaatcaggtgtctctatgctccaatat 259
Query: 61 cagcataggatcattccttcatgtcccatctacattaaaatttaatattttagcatttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 cagcataggatcattccttcatgtcccatctacattaaaatttaatattttagcatttct 319
Query: 121 gtttcttcaatctctctcattagtctgagtgtcctgactcagcacatttgattatttcca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gtttcttcaatctctctcattagtctgagtgtcctgactcagcacatttgattatttcca 379
Query: 181 atgttaatataagactcttgtacatgctgaataacacacaaataattgaaatgttgtgga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 atgttaatataagactcttgtacatgctgaataacacacaaataattgaaatgttgtgga 439
Query: 241 gaacaaagttaaaggtactgtctgagactgttctaatgagggatgctctttgattccaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gaacaaagttaaaggtactgtctgagactgttctaatgagggatgctctttgattccaag 499
Query: 301 aaggtagactgtgacagtgtcctttaaagaggacaaatgctacactctcacatggcaagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aaggtagactgtgacagtgtcctttaaagaggacaaatgctacactctcacatggcaagt 559
Query: 361 gaacacaaagtaggaggggggctaagagcatgtgtcttcacatattttaatgaataagta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gaacacaaagtaggaggggggctaagagcatgtgtcttcacatattttaatgaataagta 619
Query: 421 tttaattttattgatggattttgaactcttacgatgtgataacccactataggctcaata 480
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 620 tttaattttattgatggattttgaactcttatgatgtgataacccactaaaggctcaata 679
Query: 481 gaatcacacagaattaagctctgatatttgaacgtgatat 520
||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gaatcacacagaattaagctctgatatttgaacgtgatat 719
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 919
Length adjustment: 10
Effective length of query: 510
Effective length of database: 909
Effective search space: 463590
Effective search space used: 463590
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
