BAC Information

Click to search

BAC

Clone NameMSMg01-373H08
Chromosome5 (Build37)
Map Location 85,118,919 - 85,119,027
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039608, LOC231368, Epha5, LOC100039489
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-373H08.T7 (MSMg01no373_h08.b1)MSMg01-373H08.TJ (MSMg01no373_h08.g1)
ACCAG479484AG479485
length765790
length of high quality
(start - end)
252 (47 - 298)110 (74 - 183)
definitionCHROMAT_FILE: MSMg01no373_h08.b1 PHD_FILE: MSMg01no373_h08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:25 2005CHROMAT_FILE: MSMg01no373_h08.g1 PHD_FILE: MSMg01no373_h08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:12:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTACCTATATCCACACCATCCGCGGAATTCCTCTGCTTTCCCTCAAACTA
CAGTGGCTTGTTCTAATCTTCTGATTCCTTCTTATTCTCTGCCTTCACCT
GCCTCTGTTGACTTGCACTGAACTTCATAGACTCATAAGGAATTCAACTC
CCCTGTACTGCACTCACTGCATGACCTCCCAACTGATTGAACTTCTTCTC
TTTCCCTGCACTGCTGACAAATAGGTTCTTTTACCTGTGCTCTTCTTGTG
AGAGCTGCCCATATTATAAGTCTGACTCACTCTGTCAAATTCCTTCTGAC
TCATCACTTTGTCTACATCTCAACTAGACCTCACTTTCATACATACGACT
TTCCTTCCCCAAACTAACCTTACCTACCAACCTTGCTACCACAGGTACTC
ACCAAGGCTACTGTCTATCTTCCAGCCCAACCAGCTCCACCCTGCTGCAC
CAACCCTCCCCCCACATCCCTCAACCAACGTCCCGCACCCCACCCCCCCC
CCCCCCACCTCCCCCCAACCCCCCCTGCCCCCTTCTCCCCCTCCCTTCCC
CCACCCAACCGCTCCCCATCTCTCCCCTCCCCCACCCCCACCCCCCTCCC
CCACACCCTCCCCCCCCTCCCGCCTCCCCGCCCCCCCTCTACCCCACCCC
TCCCCCCCTCTTCCCTCCCCCCCCCCCTCCCTCTCCCCCCCTCCCTCTCC
CACCCCCCACTCCCTCTCCCCCCCTCCACCCTCGTCCACACTCCCCCCTC
CCCCCCCTCCCCCTG
CATGCAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATATTGACTAAGTATCGAGTTTTATGA
TATGTAGTATATAATGAGCAATACCTTGTATATAAGGGGGCACATTTATA
TTTAGGTAAATTGCAAATTCGTATTGAACAACACAACTTTGCAAACTTCT
AATTTTAGAATCAGGTAAATAGATGATCTACCGTCAGTAAATGACATTTT
ACTCTAATCTAAATATATTTTAATGTGCACCAAATAATGAATATAAATTT
AGTAAGTAATCAAAACATACATTTTGTCTTAGCCACTGGGAAACACAGAG
TGCCAGCAACGATGACCCGAACATGCTTCTCCCCCCAAAACCAACTCTAT
GAGCTTACCACTGGATAGAACGCTTCCATACCACTTCACATTTTACCCCT
CTCTTCGCCAGCAACTACCCCCCCACTCCACCCCACCATTCGCTTCCGCT
CCGCCACCCGCCCACCCTCCCCCCTCTCCTTCCCGCCCCTACCCACGCCC
TCCCCCGCCCCCCCCCGGTCCCCCCCCCTCCCTGCCCCCCCCCAACCCTC
CCCACGCCCCCCCTCCCACCGTCTCGCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCGCCCCCCCCCCACCCTCCCCCCCCCCCCCATCTCCCCCCCCCTCC
TCTCCCCCCCCCCCCCCTCCCCCCCTCCCCCTTCCCTCCCCCCCGCTCCC
TCCCCCCCTCCATTTCCTCCTCCTCCTCTCCTCCTCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no373_h08.g1 MSMg01no373_h08.g1 CHROMAT_FILE:
MSMg01no373_h08.g1 PHD_FILE: MSMg01no373_h08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:25 2005
         (110 letters)



>mm_chr5_85118719_85119227
          Length = 509

 Score =  182 bits (94), Expect = 6e-51
 Identities = 106/110 (96%), Gaps = 1/110 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atattgactaagtatcgagttttatgatatgtagtatataatgagcaataccttgtatat 60
           |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 309 atattgactaagtatcaagttttatgatatgtagtatataatgagcaatagcttgtatat 250

                                                             
Query: 61  aagggggcacatttatatttaggtaaattgcaaattcgtattgaacaaca 110
           |||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 249 aagggggcacatttatatttaggtaaattgcaaatt-gtattgagcaaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 110
Length of database: 509
Length adjustment: 8
Effective length of query: 102
Effective length of database: 501
Effective search space:    51102
Effective search space used:    51102
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)