Query= MSMg01no373_j18.b1 MSMg01no373_j18.b1 CHROMAT_FILE:
MSMg01no373_j18.b1 PHD_FILE: MSMg01no373_j18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:36 2005
(530 letters)
>mm_chr5_82170266_82171195
Length = 930
Score = 1002 bits (518), Expect = 0.0
Identities = 527/530 (99%)
Strand = Plus / Minus
Query: 1 caaactctgtataaacattctctatctgaaatacttaaaactctaaactacttttagacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 caaactctgtataaacattctctatctgaaatacttaaaactctaaactacttttagacc 671
Query: 61 tgggcattctggaaaagacatattcaacccttgcttgtgaatagtagggaaagctcacct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 tgggcattctggaaaagacatattcaacccttgcttgtgaatagtagggaaagctcacct 611
Query: 121 cccttctcagaaggactataggacagctatgagcaacagcaaaatgaatactcagaatca 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 610 cccttctcagaaggactataggacagctatgagcaacagcaaaatgaatactcaaaatca 551
Query: 181 gtatttcagagttgttttacaaaagtgtaactgtaagtactatccgttcttatccattaa 240
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 550 gtatttcagagttgttttacaaaagtgtaactgtaagtactatcctttcttatccattaa 491
Query: 241 cagatgcaaattgcaggtaccattactgcagaagccattacagcaggtaccatcatttca 300
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 cagatgcaaattgcaagtaccattactgcagaagccattacagcaggtaccatcatttca 431
Query: 301 ggtaccatcactatagcaaccatcactgcaggcaccatcactgcaggtaacatccttgta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ggtaccatcactatagcaaccatcactgcaggcaccatcactgcaggtaacatccttgta 371
Query: 361 ggtaccatcattgtatataacattgctgtaggtaccatatttgcatgtaccatcacagca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ggtaccatcattgtatataacattgctgtaggtaccatatttgcatgtaccatcacagca 311
Query: 421 ggagctatagctgcaggaactatcactacaggttcctttgcaggcactatagctctgaag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ggagctatagctgcaggaactatcactacaggttcctttgcaggcactatagctctgaag 251
Query: 481 aagagagttcagtgtgagagatttcatatagtcacttcactacaaagcag 530
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 aagagagttcagtgtgagagatttcatatagtcacttcactacaaagcag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space: 478400
Effective search space used: 478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no373_j18.g1 MSMg01no373_j18.g1 CHROMAT_FILE:
MSMg01no373_j18.g1 PHD_FILE: MSMg01no373_j18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:36 2005
(546 letters)
>mm_chr5_81964301_81965248
Length = 948
Score = 1002 bits (518), Expect = 0.0
Identities = 540/548 (98%), Gaps = 2/548 (0%)
Strand = Plus / Plus
Query: 1 aatgtgcctcataaggtaggggccaaagttgcacagacacgaccatgcctggtcctgatg 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 aatgtgcctcataaggtaggggccaaagatgcacagacacgaccatgcctggtcctgatg 260
Query: 61 tattaaccttgagggagccaggtgtctattgttactgagag--tcttaaacatcccccag 118
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 tattaaccttgagggagccaggtgtctattgttactgagagagtcttaaacatcccccag 320
Query: 119 aatttagttggcaacactcagatgcatttctttctttcttccattaacaaatctgtttac 178
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 aatttagttggcaacactcagatgcatttctttctttcttccattaacaaatctgtttgc 380
Query: 179 cagtcagggattaaaaaaaaattattgttcctcagatactagccaggaggtcacattgcc 238
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 cagtcagggatttaaaaaaaattattattcctcagatactagccaggaggtcacattgcc 440
Query: 239 ctcacaaggggagggcacagtagatgagttattacagctcgttgtccttcatacttcctc 298
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 441 ctcacaaggggagggcacagtagatgagttgttacagctcgttgtccttcatacttcctc 500
Query: 299 ctctttaggaggttacctttgtggtgtcctttactaaggtattcaaaaggcagagggatt 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctctttaggaggttacctttgtggtgtcctttactaaggtattcaaaaggcagagggatt 560
Query: 359 ttttgcttgtaatacttcctgaaaagaccaaattggttggtttttaagccaattaatcta 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttttgcttgtaatacttcctgaaaagaccaaattggttggtttttaagccaattaatcta 620
Query: 419 agaagagaacacctgtctctccttaaataatgagcccgatgttttcccatgaatacattt 478
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 621 agaagagaacacctgtctctccttaaataatgagtccgatgttttcccatgaatacattt 680
Query: 479 tgggaaataatgctgatcagtggagccataattcatttctagtcatctatttcttccaat 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgggaaataatgctgatcagtggagccataattcatttctagtcatctatttcttccaat 740
Query: 539 ttgaaaca 546
||||||||
Sbjct: 741 ttgaaaca 748
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 948
Length adjustment: 10
Effective length of query: 536
Effective length of database: 938
Effective search space: 502768
Effective search space used: 502768
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
