Query= MSMg01no374_g13.b1 MSMg01no374_g13.b1 CHROMAT_FILE:
MSMg01no374_g13.b1 PHD_FILE: MSMg01no374_g13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:38 2005
(533 letters)
>mm_chr5_76447567_76448501
Length = 935
Score = 880 bits (455), Expect = 0.0
Identities = 515/535 (96%), Gaps = 2/535 (0%)
Strand = Plus / Plus
Query: 1 cattccggaagaaaaac-caagtgtgtgcttcacagggtcaatgtaaagcttgttagggc 59
||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattcaggaagaaagacacaagtgtgtgcttcacagggtcaatgtaaagcttgttagggc 260
Query: 60 aggagtgggtgacttttgcctttttcccccttgattggctttatcgccaggggtgtgggt 119
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 aggaatgggtgacttttgcctttttcccccttgattggctttatttccaggggtgtgggt 320
Query: 120 atctttatgattggttagggctctggggacattccagggtggcaagggatcctcagatt- 178
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcattatgattggttagggctctggggacattccagggtggcaagggatcctcagatca 380
Query: 179 gactgcctgcagctgtggttggttgaccacgggttcctggatctgggttctcatttctgg 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gactgcctgcagctgtggttggttgaccacgggttcctggatctgggttctcatttctgg 440
Query: 239 gaaacagaaacttatgtctattcgcccaaactgccagttttcagcctgtcatggagtcag 298
|||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaacagaaacttaggcctagtcgcccaaactgccagttttcagcctgtcatggagtcag 500
Query: 299 ctctggttaactcagtcctctcgatatgggatttattaaaatagcttacaggccatggtc 358
|||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 501 ctctggctaactcagtcctctcaatatgggatttattagaatagcttacaggccatggtc 560
Query: 359 cagctagtccaacattggctgtctaccaaagagacgtccaagaatccagtagttgttcag 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagctagtccaacattggctgtctaccaaagagacgtccaagaatccagtagttgttcag 620
Query: 419 ttcacaaggcaagaagtaaccactggtcttcagaatatgccaaaatatgtaccagaatcc 478
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 621 ttcacaaggcaagaagtatccactggtcttcagaatatgccaaaatacgtaccagaatcc 680
Query: 479 catagaacaaggctatgataccagtgaaggaatggacatgcaaggaagagcaagc 533
|| ||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 681 caaagaacaaggctatgataccagtgaaggaatggatatgccaggaagagcaagc 735
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 935
Length adjustment: 10
Effective length of query: 523
Effective length of database: 925
Effective search space: 483775
Effective search space used: 483775
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no374_g13.g1 MSMg01no374_g13.g1 CHROMAT_FILE:
MSMg01no374_g13.g1 PHD_FILE: MSMg01no374_g13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:38 2005
(495 letters)
>mm_chr5_76639983_76640874
Length = 892
Score = 905 bits (468), Expect = 0.0
Identities = 488/496 (98%), Gaps = 5/496 (1%)
Strand = Plus / Minus
Query: 1 atttaagaaaagaacattaaaagctaactccttttagctctggtcacatagtgtcacttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 atttaagaaaagaacattaaaagctaactccttttagctctggtcacatagtgtcacttg 633
Query: 61 ttgccttctctgattcatgggcactttttatacattcgtttccccaacacagtcaaaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 ttgccttctctgattcatgggcactttttatacattcgtttccccaacacagtcaaaaag 573
Query: 121 gccagtaagacagaaccaagggcacatgttgcctctgtttttgcccatttggggaaatgc 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 572 gccagtaagacagaaccaagggcacatgttgcctctg---ttgcccatttggggaaatgc 516
Query: 181 tagcaaagtaatatctattaatgactgtcgtcactacatccatatatagaagtccttcta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tagcaaagtaatatctattaatgactgtcgtcactacatccatatatagaagtccttcta 456
Query: 241 tatagttgaacagtgtatgcacactgaaaactttgaaaagttggctgtcttttagatcc- 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tatagttgaacagtgtatgcacactgaaaactttgaaaagttggctgtcttttagatcct 396
Query: 300 ccaatagtccagtaaagtggtgcttgaacatagcgagtctagttgtgtgaggatccttcc 359
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 395 cc-atagtccagtaaagtggtgcttgaacatagggagtctagttgtgtgaggatccttcc 337
Query: 360 tgctcacgtgaccaaactgggctatggtcctcctttagcacggttgcggctctggagtcc 419
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tgctcacgtgaccaaagtgggctatggtcctcctttagcacggttgcggctctggagtcc 277
Query: 420 cacagtcagggtctaacacacacagggatcccctggagagcagttattaaaatactgtca 479
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 276 cacagtcagggtctaacacacatagggatcccctggagagcagttattaaaatactgtca 217
Query: 480 gacacaaactgggttt 495
||||||||||||||||
Sbjct: 216 gacacaaactgggttt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 892
Length adjustment: 10
Effective length of query: 485
Effective length of database: 882
Effective search space: 427770
Effective search space used: 427770
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
