BAC Information

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BAC

Clone NameMSMg01-374K04
Chromosome5 (Build37)
Map Location 103,828,959 - 103,829,383
singlet/doubletsinglet
Overlap geneLOC100041049
Upstream geneLOC625780, Arhgap24, Mapk10, LOC666563, 4930429D17Rik, LOC100041039, 1700021F02Rik
Downstream genePtpn13, Slc10a6, 1700016H13Rik, Aff1, Klhl8, Hsd17b13, EG666629, Hsd17b11, Nudt9, Sparcl1, LOC100041136, Dspp, Dmp1, LOC100041145, Ibsp, Mepe
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-374K04.T7 (MSMg01no374_k04.b1)MSMg01-374K04.TJ (MSMg01no374_k04.g1)
ACCAG480383AG480384
length780803
length of high quality
(start - end)		430 (44 - 473)405 (77 - 481)
definitionCHROMAT_FILE: MSMg01no374_k04.b1 PHD_FILE: MSMg01no374_k04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:56 2005CHROMAT_FILE: MSMg01no374_k04.g1 PHD_FILE: MSMg01no374_k04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:13:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTGTTCAGTTCTGAGCCCCATTTTTAATGGGGTTATTTGATTTTCT
GAAAGGACCACGCTGTCTTAAACACAGAAGATAAAAAGCCAAAGTTATTT
ATGTACATACATGTGGTAGGTTCATTGTCTAGCTGGAACATAAGACTTTT
ACTTAGTATTTTGTTATATTTAAAAAATTTTATCTGTGTGCATGTGTGCA
CACATGCCGCACACGCTTGCAGAGATTCGAGGACAATGGTAGGAGCTGCT
TTTCTCTTACTCCCCTGTGGGTTCTGAGGATGGAGTTCAGGTTGGAAGAT
TTGGTGACAGGCTCCAAGTTGCTGGCTCAGAAAAACTTTTTAAAATGGAT
ACATCAAGGCTTAAAGACTATTAAGCATGTTCTCTTTCATATATTCTGAT
TCCGTTTCCTCCCTAGAATCTTCACAGTGTTTTACCCATCGGCCTTAACC
TAGTTTTGGCATTGCCCCGTTTTATAAATGAACGTAAATATTACGGTGAG
AAGTTGACAGTATCTCTGTAAGGAAACTTATAATCCAGATATTAGTATGA
AGGGGGTAAAAATTCCTTTTCAACATGAAATTATGTCATGCCTGTCGTCC
CATGCCCTTAATCCCCACCCCTTGTGAGGCTTAATCCCTCTTTATTTTTT
GATTCTGAATTCTCCCTGTTCTACAAATCGTAGTTCCAGACACCTCACTT
TTATCAGACATTTCCTGGCTCTCATTATTC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTGTTTAGCTCTGTACCCCTTTT
TTAATTGGGTTATTTGGTTGTTCAAGTTTAATTTCTTGAGTTTTTTATAC
ATTTTGCAGAGTAGCCCTCTATCAGATGCAGGGTTGGTAAAACCTTTTCC
CAGTCTGTAGGCTGCTGATTTGTCCTGTTGACTGTGTCCTTTGCCTTACA
GAAGCTTTTCAGTTTCATGAGGTTCCCACTTGTCAATTGTTGATCTTAGA
GCCTGAGCCATTGCTTTTCTGTTCAGGAAATTGTCTCCTGTGCCAAGGAG
TTCAAGGGTATTTCTCACTTTGCATTCTGTTAGATTTAGTGTATCTGGTT
TTACTTTGAGGTTTCTAATCCCCCTGGACTTGAGTTTTGTGCAGGGTGAT
AAATATGGACCTAATTGCATTCTTCTACATGCAGACATCCAGTTAGACCA
CTTATCACCATTTGTTGAAGACGCTTTCTTTTTTCCATTTGTATGTGTTT
GGCTTCTTTGTCAAAAATCCATTGTCTGTCTCTGTGCGTCTTTATTCCAT
CTTTTTTTTATTTGCTTTTCTTGGTATAACCCTGTTTTTCTCTTCTCCTA
TCTATTATCATATTCTTCCCTATTTTTTCCCCTTGCATTTAAAATACAAT
CCTCCTCACGTTTTTCTCTCTCTTTTTTTCTCCTTTCCCCGTTCCACCTT
CACTTCTTCCCTTTCCCCGACTACCCTATTTTTATCCCCTCTATTTTCTC
TTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no374_k04.b1 MSMg01no374_k04.b1 CHROMAT_FILE:
MSMg01no374_k04.b1 PHD_FILE: MSMg01no374_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:13:56 2005
         (430 letters)



>mm_chr5_103828699_103829527
          Length = 829

 Score =  785 bits (406), Expect = 0.0
 Identities = 421/426 (98%), Gaps = 1/426 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttgttcagttctgagccccatttttaatggggttatttgattttctgaaagga 64
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 685 gaattctttgttcagttctgagccccatttttaatggggttacttgattttctgaaagga 626

                                                                       
Query: 65  ccacgctgtcttaaacacagaagataaaaagccaaagttatttatgtacatacatgtggt 124
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 625 ccacgctgtcttaaacacagaagataaaaagccaaagttatttctgtacatacatgtggt 566

                                                                       
Query: 125 aggttcattgtctagctggaacataagacttttacttagtattttgttatatttaaaaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aggttcattgtctagctggaacataagacttttacttagtattttgttatatttaaaaaa 506

                                                                       
Query: 185 ttttatctgtgtgcatgtgtgcacacatgccgcacacgcttgcagagattcgaggacaat 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 505 ttttatctgtgtgcatgtgtgcacacatgccgcacacgcttgcagagattcgaggaaaat 446

                                                                       
Query: 245 ggtaggagctgcttttctcttactcccctgtgggttctgaggatggagttcaggttggaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggtaggagctgcttttctcttactcccctgtgggttctgaggatggagttcaggttggaa 386

                                                                       
Query: 305 gatttggtgacaggctccaagttgctggctcagaaaaactttttaaaatggatacatcaa 364
           |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 385 gatttggtgacaggctccaagttgctggctcagaaaaattttttaaa-tggatacatcaa 327

                                                                       
Query: 365 ggcttaaagactattaagcatgttctctttcatatattctgattccgtttcctccctaga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ggcttaaagactattaagcatgttctctttcatatattctgattccgtttcctccctaga 267

                 
Query: 425 atcttc 430
           ||||||
Sbjct: 266 atcttc 261


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 829
Length adjustment: 9
Effective length of query: 421
Effective length of database: 820
Effective search space:   345220
Effective search space used:   345220
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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