BAC Information

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BAC

Clone NameMSMg01-374M24
Chromosome5 (Build37)
Map Location 58,420,999 - 58,421,451
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041349, LOC666455, LOC625721, EG666465, Pcdh7
Downstream geneLOC100041385, LOC100041396, LOC666499
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-374M24.T7 (MSMg01no374_m24.b1)MSMg01-374M24.TJ (MSMg01no374_m24.g1)
ACCAG480516AG480517
length7911,132
length of high quality
(start - end)		455 (51 - 505)---
definitionCHROMAT_FILE: MSMg01no374_m24.b1 PHD_FILE: MSMg01no374_m24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:10 2005CHROMAT_FILE: MSMg01no374_m24.g1 PHD_FILE: MSMg01no374_m24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:14:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTGAACAAACCAGAGTTCTAAAGTCCTGACTCCTAAAAGAA
CCCTTGCATATAAGAAGGAACAGTATGGTCATTGCTTTCAGGTAGATTTG
CTTTTAAAAGTGTAGATTGGAAGTACTCAAAATCTCATATAATATAAAGG
TCAACGGGTTGGCTTTAGAAAATAAAATTCATTTACTACTGTGAAGATGT
GGTGATTTGTTCGTGAAATGTCCTCCTCAGGGTCACATGTTTGTAAAAAG
TTTTAAGTTCTCACTTAACACTCTTCTCCAAAGACAAGCCAGGCTTAACT
ATAGAAGAAAGAAAGAGAAATGGAAGGATGAACACACACACACACACACA
CACACACACACACACTCAAGGAGGAGGGTTTTTTTTTTTTAAATAACTAT
CTAAAGAGGTGGTTAAGAGATGGATCTAAAAGTACCAGCCAAAGCGTACA
CATGTAGGAACCCTTGGCTCCAGCTGCATATGTAGCAAATGATAGCCTTA
CCTGGCATCAGTGGAAGAAGAGCCCCTTGGTCCTCTGGAGGGTCACTGAA
CTAAAATGGGGGAATGCTTGGACACTGATGCTGAATGGGTTGGTGGTTTG
TGCAACAATCTCCCCCAAAACAGAAGACGGCTAAGGCTAGTGTCCTTTTT
TTCCTTTCTCCCTTTTATTTTCCTTTTCTCTTCCTCTCTTTCTCCTCCTC
TCCTCTTATCTTTATTCTTCCTTTTACTATAATCTTTTTAA

TCTTATATCCTTTTATCTCACATTCACCCACAATATATAACCTAAGCACA
ACCGCCCACAAAACAACAAGTAAAAGTAGAAAAGAAGGCCGGGTTTCCAA
GAAAAGGGGGNGAAAANAANAGAAAGTTTACTCCCAAAAAACGGNNGGGG
AAAAAGACGTAGCCCAAAACTCGACCTATGATATTGCATCTTATATTATA
CGATACGAAGATGCTGCATATGTGGTGGACGGCTCGGCGCGTGTCTACAG
GTCGACAGGGCGCGCGGACCTCTATAAAGCAGAGTACGGTGTCACACAAA
TTACACTTTAATATCCATATATACCAAAAGATGAATCATACATACTCAAC
AAAAAATAAACTCACCATTAACAAACACCCAATTATATAATATTTCATTC
ATACATAATATATCGACAACATTTCAGTATAACATCATATCGATTCAACA
TGATACAACAACTTTTATCTAAAACCACACCAACTCATATATGATATTCT
ACAATAACATTCAATCTATCCTCTATCACTTAATACACTTTCTATACCAC
CATATAATACTAATGACTCATTACTAAAAACACATTACTTAATAAACTAC
CCAACAACTATCAAATACAACAACCTTTTATCTAACATCATAATACCATC
CCTTAATAATTTATCCACCATATACACATTGATTACAATATATTCTCTCT
TCCATTACAATTCAATAAATTAATTCACACTATCACTATCTATAACAAAA
ATATCATAGTCATAAATATAACAACTCAAACTCACCTCTACTACCGTACA
CTAAATATCATAACTACTCTACACCCTATATCCAATACTTCACTCTCATA
TCTCTCATTATAAAATAAATATAATATATAAATACAAACATCCCAATCTA
TACACGTTTAATGATATATCAATAAATTCCATAATTACGCAAATCAAAAT
CATAACCACTGATATATCCTAATATATCTATCAACATATCCATCACATAT
AAATATAACAACACATATAAAATAACATAATATATAAACATATATCCACA
ATAAACGNTATGCTTATATAACATCTAATACTCCGCTATCTTCCTGTGAT
CTTGTAACGTCACCTACATAATATTCTGTAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no374_m24.b1 MSMg01no374_m24.b1 CHROMAT_FILE:
MSMg01no374_m24.b1 PHD_FILE: MSMg01no374_m24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:14:10 2005
         (455 letters)



>mm_chr5_58420792_58421646
          Length = 855

 Score =  837 bits (433), Expect = 0.0
 Identities = 446/453 (98%), Gaps = 6/453 (1%)
 Strand = Plus / Plus

                                                                       
Query: 8   ttctgaacaaaccagagttctaaagtcctgactcctaaaagaacccttgcatataagaag 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ttctgaacaaaccagagttctaaagtcctgactcctaaaagaacccttgcatataagaag 267

                                                                       
Query: 68  gaacagtatggtcattgctttcaggtagatttgcttttaaaagtgtagattggaagtact 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gaacagtatggtcattgctttcaggtagatttgcttttaaaagtgtagattggaagtact 327

                                                                       
Query: 128 caaaatctcatataatataaaggtcaacgggttggctttagaaaataaaattcatttact 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 caaaatctcatataatataaaggtcaacgggttggctttagaaaataaaattcatttact 387

                                                                       
Query: 188 actgtgaagatgtggtgatttgttcgtgaaatgtcctcctcagggtcacatgtttgtaaa 247
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 388 actgtgaagatgtggtgatttgtttgtgaaatgtcctcctcagggtcacatgtttgtaaa 447

                                                                       
Query: 248 aagttttaagttctcacttaacactcttctccaaagacaagccaggcttaactatagaag 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 aagttttaagttctcacttaacactcttctccaaagacaagccaggcttaactatagaag 507

                                                                       
Query: 308 aaagaaagagaaatggaaggatgaacacacacacacacacacacacacacacacacac-- 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 508 aaagaaagagaaatggaaggatgaacacacacacacacacacacacacacacacacacac 567

                                                                       
Query: 366 --tcaaggaggagggtttttttttttt--aaataactatctaaagaggtggttaagagat 421
             |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||
Sbjct: 568 actcaaggaggagggttttttttttttttaaataactatctaaagaggtggttaagagat 627

                                            
Query: 422 ggatctaaaagtaccagccaaagcgtacacatg 454
           |||||||||||||||||||||||||||||||||
Sbjct: 628 ggatctaaaagtaccagccaaagcgtacacatg 660


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space:   376025
Effective search space used:   376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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