TTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAACAATGGAATCTCAAATGGATGAGAATCACCTAAAGAAATGT
TCAGCATCTTTAGTCATCAGGGAAATGCAAATTAAAACAACTCTGAGATC
CACCTTACACCCATCAGAATGGCTAAGATAAAAAAAAAAAAACACGCAAG
GGACAACACATGCTATGAGGATGTTGAGCAAGGGGAACACTCCTCCAAGG
CTGGTGGGAGTGCAAACATGTACAACCACTCTGGAAATCAATTTGACAGT
TCTCAGAAGATTGGGAATAGTTCTACCTGAAGATCTAGGCTATATCACTC
CTGTGTATATACCCCCCAAAAAAATGCTCTACCATTCCACAAGGACACTC
AACTATGTTCATAGCAGCTTCATTCATAATAGCCAGAAACTGGAAACAAC
CTATGTAGCGGTGAATAGTTAATCTGCTTTGGCTTCTGGTGGGTTGCTCA
TGCACACACCTGTCCAAGAGCTCTGTATTTATGAATAANAGACATACACA
CACACACACACACACACACACACACACACACACTCACACACACACACTCA
AACACACACATTCTCACACACACACACTCACACAAAAATTATACTCTTAA
CACAACACACAAATTCCAAAACTTTCAAAAAAATATATTTTAACAAACAA
AAAAAATTTTAAAAAATATTTTTATATAAAAAAATTTCCAAAAATTTC

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTCTCTTCCTATTTCCTGCCTAAGTCATAG
GCCATCAGATTCATTTCTGACAGGTGACACATCTATACAGACATAAGATA
TTCTCTGTTCTTTTCTAATAAGAGACAGAAAAGGACCAGCTCCAGTGAGG
TGGGGAGGTGGGAAGGAGCCAGAAGTAGAGAGAGGAGAAAATATAATCAG
AATATATTGTATGAGAAAAGAATCTATTTTCAATTAAAGGAAAAAATGAA
AAAAAGAAATTAATAGTGTAAAGGAAGATTTTAGATATTCAGGAAAAACT
TACAGAAATGTGCAAAGATATTGGTGAGCTTTTAGGCACTGAATGTTCTC
AAATTTACATCTAATAAACATCTTTTTTGTCTTAGCATTAAATGTTAATT
TGACACAGCCTGGAATCAACTGAGAAGGGAATTTCAATGTAGGAATTGTC
CAGATCAGATTGGCCTGTGAGTATGTTTTGATTATTAATTAAATGTGTGT
GTGTGTGTGTGTGTGTGTGTGTNTNTNNNTNNNNTTNNNNNNNTTTTTTN
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTNTTT
TTTTTTTTNNNTNNTNTTTNNNTTTTTTTNTTTTTTTTTTTTTTTNNTTN
NNTTTTNTTTTTTTTTTTTTTTTNNTTTTTNTT

Query= MSMg01no376_f12.g1 MSMg01no376_f12.g1 CHROMAT_FILE:
MSMg01no376_f12.g1 PHD_FILE: MSMg01no376_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:13 2005
         (503 letters)



>mm_chr5_54190873_54191775
          Length = 903

 Score =  857 bits (443), Expect = 0.0
 Identities = 492/523 (94%), Gaps = 26/523 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctctcttcctatttcctgcctaagtcataggccatcagattcatttctgacaggtgaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 202 tctctcttcctatttcctgcctaagtcataggccatcagattcatttttgacaggtgaca 261

                                                                       
Query: 61  catctatacagacataagatattctctgttcttttctaataagagacagaaaaggaccag 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 262 catctatacagacataagatattctctgttcttttctaataagagacagaaaaggaccgg 321

                                                                       
Query: 121 ctccagtgaggtggggaggtgggaaggagccagaagtagagagaggagaaaatataatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ctccagtgaggtggggaggtgggaaggagccagaagtagagagaggagaaaatataatca 381

                                                                       
Query: 181 gaatatattgtatgagaaaagaatctattttcaattaaaggaaaaaatgaaaaaaagaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 382 gaatatattgtatgagaaaagaatctattttcaattaaaggaaaaaatgaaaaaa-gaaa 440

                                                                       
Query: 241 ttaatagtgtaaaggaagattttagatattcaggaaaaacttacagaaatgtgcaaagat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaatagtgtaaaggaagattttagatattcaggaaaaacttacagaaatgtgcaaagat 500

                                                                       
Query: 301 attggtgagcttttaggcactgaatgttctcaaattt----------aca---------- 340
           ||||||||||||||||||| |||||||||||||||||          |||          
Sbjct: 501 attggtgagcttttaggcaatgaatgttctcaaatttcaatagtatcacaaaaggggagg 560

                                                                       
Query: 341 ----tctaataaacatcttttttgtcttagcattaaatgttaatttgacacagcctggaa 396
               | || |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 561 gagcttta-taaacatcttttttgtcttagcgttaaatgttaatttgacacagcctggaa 619

                                                                       
Query: 397 tcaactgagaagggaatttcaatgtaggaattgtccagatcagattggcctgtgagtatg 456
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tcaactgagaagggaatttcaatgtaggaattgtccagatcagattggcctgtgagtatg 679

                                                      
Query: 457 ttttgattattaattaaatgtgtgtgtgtgtgtgtgtgtgtgt 499
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ttttgattattaattaaatgtgtgtgtgtgtgtgtgtgtgtgt 722


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 903
Length adjustment: 10
Effective length of query: 493
Effective length of database: 893
Effective search space:   440249
Effective search space used:   440249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)