Query= MSMg01no376_h01.b1 MSMg01no376_h01.b1 CHROMAT_FILE:
MSMg01no376_h01.b1 PHD_FILE: MSMg01no376_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:20 2005
(583 letters)
>mm_chr5_72838889_72839871
Length = 983
Score = 1112 bits (575), Expect = 0.0
Identities = 578/579 (99%)
Strand = Plus / Plus
Query: 5 gaattcaagtggatcatatttttaatctctcaaaccataaataataccttcaggtctcaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaagtggatcatatttttaatctctcaaaccataaataataccttcaggtctcaa 264
Query: 65 ggcaattaattatcagccatgggctggatggatgaggtttttatcatacttaactttacg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggcaattaattatcagccatgggctggatggatgaggtttttatcatacttaactttacg 324
Query: 125 gtccatggagacaacccagaatgagtgcccaacaaataactgcagatagacaaacacccc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtccatggagacaacccagaatgagtgcccaacaaataactgcagatagacaaacacccc 384
Query: 185 atagaatgttaaaccaaacactctggaatcaaaatatctcataaaactcagaagtggaca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atagaatgttaaaccaaacactctggaatcaaaatatctcataaaactcagaagtggaca 444
Query: 245 taggcatcaggagaagttttcacagcttaccctaattataaacacgtgttcaaaagtctg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 taggcatcaggagaagttttcacagcttaccctaattataaacacgtgttcaaaagtctg 504
Query: 305 ttcatgaaatactgccaagcagcgagataaaggaataatacacgccaacacaaaaacatg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttcatgaaatactgccaagcagcgagataaaggaataatacacgccaacacaaaaacatg 564
Query: 365 agggatggtctgcatcaaacatggacagacagaaagctttgagtttggaaaatttcttca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agggatggtctgcatcaaacatggacagacagaaagctttgagtttggaaaatttcttca 624
Query: 425 ctgtactcattttcaactacagctatgtgaaaaggcttattcttcaaagacacaagaaac 484
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctgtactcattttcaactacagctatgtgaaaaggcttattcttcaaagacacaagaaat 684
Query: 485 agccaacagactcccactggtgaggctacccaaatccctgagacagtcagcaaaccaagt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agccaacagactcccactggtgaggctacccaaatccctgagacagtcagcaaaccaagt 744
Query: 545 gactggggccaaaaatcatgcacagtatcaattctttaa 583
|||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gactggggccaaaaatcatgcacagtatcaattctttaa 783
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space: 557529
Effective search space used: 557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no376_h01.g1 MSMg01no376_h01.g1 CHROMAT_FILE:
MSMg01no376_h01.g1 PHD_FILE: MSMg01no376_h01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:20 2005
(531 letters)
>mm_chr5_73042845_73043775
Length = 931
Score = 980 bits (507), Expect = 0.0
Identities = 523/531 (98%), Gaps = 5/531 (0%)
Strand = Plus / Minus
Query: 1 caagccagctaaaactatgtagtgagaccttgtctcaaaacaaaacaaaacaaaacaaaa 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 788 caagccagctaaaactatgtagtgagaccttgtct-----caaaacaaaacaaaacaaaa 734
Query: 61 caccctaaaagtgaataaataactaaacaaacaattttaaatgaaaatgcaggaaaggaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 caccctaaaagtgaataaataactaaacaaacaattttaaatgaaaatgcaggaaaggaa 674
Query: 121 cttaagaaacgttccagtaaccttgcatgcatactttaagtttttaaaatcatttatagt 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 cttaagaaacattccagtaaccttgcatgcatactttaagtttttaaaatcatttatagt 614
Query: 181 tcctactaaataccaggctcaacaacctactgctagtacacaccagtgtttcctgatcag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 tcctactaaataccaggctcaacaacctactgctagtacacaccagtgtttcctgatcag 554
Query: 241 cttttagtggagaatcttattctgttttggggagttagagggatgttttttaagtagtgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 cttttagtggagaatcttattctgttttggggagttagagggatgttttttaagtagtgc 494
Query: 301 ttaattttggcacgcaagaaatcttttaggacttagaaacattgtgttttagtctgaaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ttaattttggcacgcaagaaatcttttaggacttagaaacattgtgttttagtctgaaga 434
Query: 361 catggtggaaatctttcagagcatttgataaacagttatagtttacgaagaaaaccaaag 420
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 433 catggtggaaatctttcagagcatttgataaacagttatagtttacaaagaaaaccaaag 374
Query: 421 tgtcttagtagcaaaaactatcaccatttcacagattttgagaaatgcctatcacatgta 480
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 373 tgtcttagtagcaaaaactatcaccatttcacagactttgagaaatgcctatcacatgta 314
Query: 481 ttttttggaagagtgatgtgtccaatgctaagaaacttgtcatgtctcaga 531
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ttttttggaagagtgatgtgtccaatgctaagaaacttgtcatgtctcaga 263
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space: 479841
Effective search space used: 479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
