BAC Information

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BAC

Clone NameMSMg01-376I12
Chromosome5 (Build37)
Map Location 31,461,881 - 31,462,359
singlet/doubletsinglet
Overlap geneGtf3c2
Upstream geneHadha, Hadhb, Gpr113, EG384325, D5Wsu178e, Gm1060, Otof, 1700001C02Rik, 1700041E20Rik, Kcnk3, 4930471M23Rik, Cenpa, Dpysl5, Mapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23, Slc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17
Downstream geneEif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr, Zfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000, Bre, Fosl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-376I12.T7 (MSMg01no376_i12.b1)MSMg01-376I12.TJ (MSMg01no376_i12.g1)
ACCAG481826AG481827
length751740
length of high quality
(start - end)		507 (44 - 550)479 (71 - 549)
definitionCHROMAT_FILE: MSMg01no376_i12.b1 PHD_FILE: MSMg01no376_i12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:27 2005CHROMAT_FILE: MSMg01no376_i12.g1 PHD_FILE: MSMg01no376_i12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACCAATGATTCCATCTTAACTTAGACTTAGTGTGGTAACTTGTGAGG
TTTTGTTGTTGTTGTTTTAATTGTTTTCAGGTCTTTTTGAGACAGTCCTC
ACTGGTTGGCCCAAGTTGGCCTCTAACAGCAGTATTCATGCTTTGCATGC
CTCCCAAATCCTGGGATTGTAATAATATATGCTTCTACTCCTGGCTAAGG
TTTTAATTGTTACACATAAAATTTACATCTGGTGTTAACCTCTCAGGTAC
AACAGTTTAAAGCTGAATGTGATAGTCTGTCTGTAATGCCAGTGTTTGGG
AGGTAGGGACAGGAAGGAGTTCAAGGTTCCCCCATGCTACACAAAACCCT
ATTTTAAAATGAAAATGCAGTTTTGTAGTATTCAGTATATTCATGCCGTG
TAGCTAATTTTCAGCACTCTTCATTTTGGAAAGCTAGAACTCTACTCCCA
GAACATTTCTTCAGTCCCTGACAACCACTATTCTATGGTCTATATGACAA
CCACTGTTCTATGCTGCTGCTGCTGCTGCTTACTACTTTTTCCTCTTCCT
CCTCTTTCTTCTCCTTTCTTCTTCTTTTGAGGGGAAAGGAAATAAAGCGG
ATCCCCCCATTGTAGCTTAAATGGCCTAAAAAAACCAACTGGGTTGGCCC
CCCTTTTGGCTCCGGCCCCCAACGGCTAAGATACGGGTTGTTACCCCCCC
G

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCACAGAGCCCGTAACTGAAAAGGTGAAAAA
AAATAAAATAAGCCTTCCTTCTTCTAAGAACATTGTTTGTTTCTTCCAAA
ATTCAGATACCTCAGCCAACAAACTCAGCTCTCCTTTCCCCACAATCTGA
CATGCTTTGCCCCCCAACCCGCAGGGCCTGTCCCCAGAACTCATATCTTC
ATCTTGTCGTACGAGGCATAACAGTTGTCTTGAGCCACTGTGACACCATT
ATAGGGGAGCAGCCAGGAAAGCTCTGTACTCAAGAAGCGCTTGATACAGT
TTATTGGTTCATAAGGTCGTCGAAGATCCCAGAATTTGATTTTCCGGTCA
CTCCCTGCAGACACCAGGAAATGACTGAAAAAATGGGAGATGAGATCAGA
ACCTATGCAGAAGAGTCCGCCTGCTACAGTTCCCCACTCCACAGCCCTCT
GACTCTGTACCTGTTAGCTTTGCACCACTGAATTGTACGGACAGCCTGGT
CATGGGCTAGGAAACACTGGAAGGGATAGAGCTTTAAGGAGCCATCAAAG
AGCCGTATTCTTAGGNAGGNGGAGNTAGNGGGAAAAATTCNGAAAACAAC
CTTGGCTAAAGAGAAATAAAATGTACACTTTAAGGAAAATTCTTGACTTT
TTAAAAACTCTATTCCCACAAGATTTTCCTAATAATCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no376_i12.g1 MSMg01no376_i12.g1 CHROMAT_FILE:
MSMg01no376_i12.g1 PHD_FILE: MSMg01no376_i12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:27 2005
         (479 letters)



>mm_chr5_31461681_31462559
          Length = 879

 Score =  888 bits (459), Expect = 0.0
 Identities = 474/479 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacagagcccgtaactgaaaaggtgaaaaaaaataaaataagccttccttcttctaagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacagagcccgtaactgaaaaggtgaaaaaaaataaaataagccttccttcttctaagaa 260

                                                                       
Query: 61  cattgtttgtttcttccaaaattcagatacctcagccaacaaactcagctctcctttccc 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cattgcttgtttcttccaaaattcagatacctcagccaacaaactcagctctcctttccc 320

                                                                       
Query: 121 cacaatctgacatgctttgccccccaacccgcagggcctgtccccagaactcatatcttc 180
           |||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||
Sbjct: 321 cacaatctgacatgctctgcccctcaacccacagggcctgtccccagaactcatatcttc 380

                                                                       
Query: 181 atcttgtcgtacgaggcataacagttgtcttgagccactgtgacaccattataggggagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcttgtcgtacgaggcataacagttgtcttgagccactgtgacaccattataggggagc 440

                                                                       
Query: 241 agccaggaaagctctgtactcaagaagcgcttgatacagtttattggttcataaggtcgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agccaggaaagctctgtactcaagaagcgcttgatacagtttattggttcataaggtcgt 500

                                                                       
Query: 301 cgaagatcccagaatttgattttccggtcactccctgcagacaccaggaaatgactgaaa 360
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 501 cgaagatcccagaatttgattttccggtcactccccgcagacaccaggaaatgactgaaa 560

                                                                       
Query: 361 aaatgggagatgagatcagaacctatgcagaagagtccgcctgctacagttccccactcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaatgggagatgagatcagaacctatgcagaagagtccgcctgctacagttccccactcc 620

                                                                      
Query: 421 acagccctctgactctgtacctgttagctttgcaccactgaattgtacggacagcctgg 479
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acagccctctgactctgtacctgttagctttgcaccactgaattgtacggacagcctgg 679


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space:   407561
Effective search space used:   407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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