BAC Information

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BAC

Clone NameMSMg01-376K11
Chromosome5 (Build37)
Map Location 15,195,737 - 15,196,254
singlet/doubletsinglet
Overlap geneSpeer7-ps1
Upstream geneSema3e, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik
Downstream gene4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-376K11.T7 (MSMg01no376_k11.b1)MSMg01-376K11.TJ (MSMg01no376_k11.g1)
ACCAG481920AG481921
length740743
length of high quality
(start - end)		536 (69 - 604)518 (76 - 593)
definitionCHROMAT_FILE: MSMg01no376_k11.b1 PHD_FILE: MSMg01no376_k11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:36 2005CHROMAT_FILE: MSMg01no376_k11.g1 PHD_FILE: MSMg01no376_k11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:16:36 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACCTGTGCCATACCGAATGACAGAGAAGCACCTGATAAAATGT
TCAACATCCTTAATCATCAGGGAAACACAAATCAAAACAACACTGAGATT
CCACTTCACTCCTGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCA
GATGCTGGCGAGGATGTGGAGAAAGGGGAACACTCCTCCATTGTTGGTGG
GATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAG
AAAATTGGACATAGTACTACCTTATGATCCTGCAACACCTCTCCTGGGCA
TATATCCAGAAGATGTCCCAACCAGTAAGAAGAACACATGATCCACTATG
TTCATAGCAGCCTTGTTTATAATAGCCAGAAGCTGGAAAGAACCCAGATG
CCCCTCAACAGAGGAATGGATACATAAAATGTGGTACATTTACACAATGG
AATACTACTCAGCTATTAAAAAAATGAATTTATGAAATTCCTAGACAAAT
GGATGGACCTGGAGGGTATCATCCTTAGTGAAATAACCCAATCACAAAGG
AACTCGAACAATATGTACTCACTGATAAGTGGATATTAANCCAGAAACTT
AGGATACCTAAGATATAAAATATACTTGCCCAAAGCTTGAAATTCCAGAA
GAAAGAAAACCACAGGGGGGACCTTTTCCCCTTTCTTAAA

CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCTGCTCATCACAAGCCGTCACT
AACAGAGTGTGGGTGGTGAGAACTAGTGCTTATTTGTTGATGAAGAAGTA
AGAACATACATACATCAGGGACCACATTTTGAATGTGTTTTGTGGTACAG
CCTAGGTTTTGGGTGTTTATGAACAGTATACTTGAGGAAACCTTGGAATT
GACAGCTTTATGTGCTCTACATTAAAATATTACTTTTACATTTGCTACAT
TTACATGACGATGAATAAACCCCAGTGATTGCTTACTGCATTATAACACT
GCTGTTAGTGTTAACCCACGTGACTGTCAGGATGTACACAGAGATGGTTG
TAACTTAGCAACTTATCTTCAGCTATTTTTATAGACTGTCAAGACAACAG
CCATGATAGTATTATATTAGGACTGTCATGCTTTTAAATGTTAAAAAATG
CTTGTATGTATAAAATATAAAATTGCAAAAGAGCAGTAACTCATTGAGAT
TGTTATAGATTAAACTTTATTCATTTAAAAAGTAAACTTTAATTTTGTTA
AGGAATTTAAANCAGAACCCAATAAAAAGAAATAATATACTATCTTTTTA
TACAAAACTTGTAATTTAAAGCATGTTATTTTGGTAATTTTACTAACCTC
GAACAATATTTTAAGAAAAATTAGTTAATCCAGATGGGGAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no376_k11.g1 MSMg01no376_k11.g1 CHROMAT_FILE:
MSMg01no376_k11.g1 PHD_FILE: MSMg01no376_k11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:36 2005
         (518 letters)



>mm_chr5_15195537_15196454
          Length = 918

 Score =  917 bits (474), Expect = 0.0
 Identities = 507/518 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttctgctcatcacaagccgtcactaacagagtgtgggtggtgagaactagtgcttattt 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 718 tttctgctcatcacaagccgtcactaacagaatgtgggtggtgagaactagtgcttattt 659

                                                                       
Query: 61  gttgatgaagaagtaagaacatacatacatcagggaccacattttgaatgtgttttgtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 gttgatgaagaagtaagaacatacatacatcagggaccacattttgaatgtgttttgtgg 599

                                                                       
Query: 121 tacagcctaggttttgggtgtttatgaacagtatacttgaggaaaccttggaattgacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 tacagcctaggttttgggtgtttatgaacagtatacttgaggaaaccttggaattgacag 539

                                                                       
Query: 181 ctttatgtgctctacattaaaatattacttttacatttgctacatttacatgacgatgaa 240
           |||||| |||||||||||||||||| ||||||| ||||| ||||||||||||||||||||
Sbjct: 538 ctttatatgctctacattaaaatataacttttatatttgttacatttacatgacgatgaa 479

                                                                       
Query: 241 taaaccccagtgattgcttactgcattataacactgctgttagtgttaacccacgtgact 300
           ||||||||| |||||||||||||| |||||| |||| |||||||||||||||||||||||
Sbjct: 478 taaaccccaatgattgcttactgcgttataatactgttgttagtgttaacccacgtgact 419

                                                                       
Query: 301 gtcaggatgtacacagagatggttgtaacttagcaacttatcttcagctatttttataga 360
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 418 gtcaggatgtacacagagatggtcgtaacttagcaacttatcttcagctatttttataga 359

                                                                       
Query: 361 ctgtcaagacaacagccatgatagtattatattaggactgtcatgcttttaaatgttaaa 420
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ctgttaagacaacagccatgatagtattatattaggactgtcatgcttttaaatgttaaa 299

                                                                       
Query: 421 aaatgcttgtatgtataaaatataaaattgcaaaagagcagtaactcattgagattgtta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 aaatgcttgtatgtataaaatataaaattgcaaaagagcagtaactcattgagattgtta 239

                                                 
Query: 481 tagattaaactttattcatttaaaaagtaaactttaat 518
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tagattaaactttattcatttaaaaagtaaactttaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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