CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGTGTATTCCAGTAGGTCTCTATTCTTGTGCCTTCTCTGGAACTT
TTTTCCATTCAATTTTAGTTGTTGTTGTTGCTTTCTTATCCAACTTCAAT
GTGATAGTTCCTGTTTTATCTAATTATACTTTATTTTGTAATATTTTTAA
ATGTGTAAATGAATAAACAAAAAACTATTTCCAAGGCTAAAGGTTAACAA
GTGAAGTGTAACTTATATCTACTGGGATATTGAAAATCATAGTTCTACAA
TGGAGTCATCCTGAATATATTAACCACTTCAAGGCAGGACTCATGTTCAG
AAGCTGTTAACACCATTTAGTGGACTCACAGTGTTTTGTGTGCTGTTATT
TTGCTACTGTTTTCAGGAGGGGAGGGATTTGTTTTATTTTGGTATGTATA
TAGGTGTGAGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNTNNNTNNNTNNNNNNNNNTNNTNNTTTTNTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTNTTTTTTTNTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

GAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTAACTGAGGAAACTCGAAGGACTCA
GAAACACCTAAAGAAATGTTCATCATCCTAAGTCATCAGGGAACTGCAAA
TCAAAACGACCCAGAGATTTCACCTCACCAGTCAGAATGGCTAAGATGAA
AAACTCAGGAGACAGCAGATACTGGTGAGGATGTGGAGAAAGAGGAACAC
TCCTCCATTGATGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCA
GTCTGGTGATTCCTCAGAAAATTGAACAAAGTACTACCTGAGGACCTAGC
TATACCACTCCTGGCATATACCCAGAAGATGCTCCAACATGTAATAGGGA
CACCTGCTTCACTATATTCATAGCAGCCTTATTTATAATAGCCAGAATTT
GGAAGGAACCCAGATGTCCCTCAACAGAGGAATGGATACACAAAATGTGG
TACATTTACACAATGGAGTACTACTCAGCCTTTAAAAACAATGACTTCAT
GAAATTTGGAGCATTGGATGGAACTTGAGAATATCATCCTGAGTGAGGTG
ACTCAGACACCAAGAAAACAATATCATATTTACTGTTAAGTGGATATTAG
CCTAAAAGTTCAAAATACCCCGAATTCAATTCTCAGACCATATGAAGCCT
AAGAAGAGGGGAACCCCAAAATGGAGGCCTCCCCGGTTTTTTAAAA

Query= MSMg01no376_k12.b1 MSMg01no376_k12.b1 CHROMAT_FILE:
MSMg01no376_k12.b1 PHD_FILE: MSMg01no376_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:16:36 2005
         (417 letters)



>mm_chr5_12428224_12429040
          Length = 817

 Score =  739 bits (382), Expect = 0.0
 Identities = 406/414 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccagtgtattccagtaggtctctattcttgtgccttctctggaacttttttcca 63
           ||||||||||||||  | ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 204 ggaattccagtgtaaacaagtaggtctctattcttgtgccttctctggaactttttttca 263

                                                                       
Query: 64  ttcaattttagttgttgttgttgctttcttatccaacttcaatgtgatagttcctgtttt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttcaattttagttgttgttgttgctttcttatccaacttcaatgtgatagttcctgtttt 323

                                                                       
Query: 124 atctaattatactttattttgtaatatttttaaatgtgtaaatgaataaacaaaaaacta 183
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 324 atctaattatactttattttgtaatatttttaaatgtgtaaatgaataaacaaaaagcta 383

                                                                       
Query: 184 tttccaaggctaaaggttaacaagtgaagtgtaacttatatctactgggatattgaaaat 243
           |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 384 tttccaaggctaaaggttaacaagtgaattgtaacttatatctactgggagattgaaaat 443

                                                                       
Query: 244 catagttctacaatggagtcatcctgaatatattaaccacttcaaggcaggactcatgtt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 catagttctacaatggagtcatcctgaatatattaaccacttcaaggcaggactcatgtt 503

                                                                       
Query: 304 cagaagctgttaacaccatttagtggactcacagtgttttgtgtgctgttattttgctac 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cagaagctgttaacaccatttagtggactcacagtgttttgtgtgctgttattttgctac 563

                                                                 
Query: 364 tgttttcaggaggggagggatttgttttattttggtatgtatataggtgtgaga 417
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgttttcgggaggggagggatttgttttattttggtatgtatataggtgtgaga 617


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space:   329664
Effective search space used:   329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)