BAC Information

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BAC

Clone NameMSMg01-377F07
Chromosome5 (Build37)
Map Location 22,551,140 - 22,690,306
singlet/doubletdoublet
Overlap geneLhfpl3, LOC100042101
Upstream geneReln, LOC100041982, Orc5l, LOC100042049, LOC668232, LOC100042067, LOC671222, LOC625174, EG625219
Downstream geneLOC100042082, 4930580E04Rik, BC050254, Srpk2, Pus7, Rint1, 4933427G23Rik, Tomm7, LOC671410, Drctnnb1a, LOC627317, Klhl7, LOC100042211, Nupl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377F07.T7 (MSMg01no377_f07.b1)MSMg01-377F07.TJ (MSMg01no377_f07.g1)
ACCAG482438AG482439
length772787
length of high quality
(start - end)
428 (68 - 495)361 (78 - 438)
definitionCHROMAT_FILE: MSMg01no377_f07.b1 PHD_FILE: MSMg01no377_f07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:28 2005CHROMAT_FILE: MSMg01no377_f07.g1 PHD_FILE: MSMg01no377_f07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,551,140 - 22,551,567)(22,689,946 - 22,690,306)
sequence
NNNTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAGGTATCTTGTCTGCTGAGCCAGTTATTTTTGTGGCCATGTG
TCACTCTTAAGATGCTCAGTTCCCAGAGCAATGCCCAGGCTTCACAAGAC
CATGATGAACTGTTGTCAAACAGATGATGCAAACGAAGATGGACACACGG
AAGAAAGTGTGTGGATGAGCTTACAGAGAGAAAACAAGTCCTGAGTTTGT
GGGAGTCTTTTAATTCATGCTTTGTGAAGCTGGGAAAAGGAGTTTCCTAA
ATACCAAGTAACACAACTTAATGAAGGCATAAATCTACATGTGGCTGTGA
TTAAATCACTGATTTTTAATATTTTGAATCAAATAAAATGTTTCCTTTCC
CAGACACACTACAGACTTTCAGAACTTATGNGCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCNCTCTCTCTCTCTCTCTCTCATATN
TCATGGGCATCTCTGCTTAAAACACTTTCCCCTTTATCGNGCTTCACTTA
AAAAAAAAACCCACTGGNGGACCCCCTCTTCTACCTAAACATGATTGGGG
ATATTATACATCTTTTTCCCAGTGTGGTTCTCTTCCTCCCCACCCAAATA
ACATTATAATATATGTCTTTTGTTTCCCACATTTATTTTTCCCACATATC
CAATTATTTTTCATCTTCATGTAGGTGACTNCCTCTCCGTTCCTATTTCC
TTCTTTCTTCCCTTTTCCTTCA
NNTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGGCAGATTCTCCAGTCCTTGTT
CTCCATGTAAAACCTTGCAGGAACACTAGCCTTGTGACAGGCAGAGCTGA
GGCCTCACCAGGGGCTGCTGGACTTCCTGCTGCACTGTCAGTCCTATAGG
TTTTAACACTGCCTGCAGCAGGCTTTAATTACCCATAAATGTACCACCTG
TCTCCTGTCTAGTGCTTGATCATGAAACCTATCCTAATTCACTGTGCAAT
GCGGCTGAAATTCCATGCTGAGGTGCAGAATCACAGAATCTACAGAAGAG
AGGCCAGAGTTCAGGTAAAACAAGGGGCTGGTGTCCTCGTTCTTCAGGGT
TACTTACACTGCTGGGATCTGAACTAGCTTGGATCAGAGAAGAGATGGGT
TTGAGACAAAAAGGAGNTTGGGTTTAGCCTAAAAATCCGGCTGANANANA
GAGAGAGAGAGAGAGAGAGATATTTAGTTTGTTTTTTTNNTTNTTTTTTT
TTTNTCCTTTTTTTTNCTTTTTTAATACTCTTCTTATCTACTCCACCTCT
GCTCTTTTTTACTCCTTTACCTTTCCCACAATATTATTTCACACCCACCC
ACATTACCCCCCTTCTTCCCTTTTCTTCTCTTCATTCCAGCCCTCTTCCT
TCCTACTCATTCACCTTTATCTCTTTTCCTTTTTCTCCCTACCTTTCCCC
CCCCTCTACTCTTTATTTCTTATATCTCTCCCCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_f07.b1 MSMg01no377_f07.b1 CHROMAT_FILE:
MSMg01no377_f07.b1 PHD_FILE: MSMg01no377_f07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:28 2005
         (428 letters)



>mm_chr5_22550940_22551767
          Length = 828

 Score =  816 bits (422), Expect = 0.0
 Identities = 426/428 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtctgctgagccagttatttttgtggccatgtgtcactcttaagatgctcagttcccaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtctgctgagccagttatttttgtggccatgtgtcactcttaagatgctcagttcccaga 260

                                                                       
Query: 61  gcaatgcccaggcttcacaagaccatgatgaactgttgtcaaacagatgatgcaaacgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaatgcccaggcttcacaagaccatgatgaactgttgtcaaacagatgatgcaaacgaa 320

                                                                       
Query: 121 gatggacacacggaagaaagtgtgtggatgagcttacagagagaaaacaagtcctgagtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatggacacacggaagaaagtgtgtggatgagcttacagagagaaaacaagtcctgagtt 380

                                                                       
Query: 181 tgtgggagtcttttaattcatgctttgtgaagctgggaaaaggagtttcctaaataccaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtgggagtcttttaattcatgctttgtgaagctgggaaaaggagtttcctaaataccaa 440

                                                                       
Query: 241 gtaacacaacttaatgaaggcataaatctacatgtggctgtgattaaatcactgattttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtaacacaacttaatgaaggcataaatctacatgtggctgtgattaaatcactgattttt 500

                                                                       
Query: 301 aatattttgaatcaaataaaatgtttcctttcccagacacactacagactttcagaactt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatattttgaatcaaataaaatgtttcctttcccagacacactacagactttcagaactt 560

                                                                       
Query: 361 atgngctctctctctctctctctctctctctctctctctctctctctcnctctctctctc 420
           ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 561 atgtgctctctctctctctctctctctctctctctctctctctctctctctctctctctc 620

                   
Query: 421 tctctctc 428
           ||||||||
Sbjct: 621 tctctctc 628


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 90
Number of extensions: 27
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space:   343161
Effective search space used:   343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no377_f07.g1 MSMg01no377_f07.g1 CHROMAT_FILE:
MSMg01no377_f07.g1 PHD_FILE: MSMg01no377_f07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:28 2005
         (361 letters)



>mm_chr5_22689746_22690506
          Length = 761

 Score =  698 bits (361), Expect = 0.0
 Identities = 361/361 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggcagattctccagtccttgttctccatgtaaaaccttgcaggaacactagccttgtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggcagattctccagtccttgttctccatgtaaaaccttgcaggaacactagccttgtga 502

                                                                       
Query: 61  caggcagagctgaggcctcaccaggggctgctggacttcctgctgcactgtcagtcctat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caggcagagctgaggcctcaccaggggctgctggacttcctgctgcactgtcagtcctat 442

                                                                       
Query: 121 aggttttaacactgcctgcagcaggctttaattacccataaatgtaccacctgtctcctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggttttaacactgcctgcagcaggctttaattacccataaatgtaccacctgtctcctg 382

                                                                       
Query: 181 tctagtgcttgatcatgaaacctatcctaattcactgtgcaatgcggctgaaattccatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctagtgcttgatcatgaaacctatcctaattcactgtgcaatgcggctgaaattccatg 322

                                                                       
Query: 241 ctgaggtgcagaatcacagaatctacagaagagaggccagagttcaggtaaaacaagggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgaggtgcagaatcacagaatctacagaagagaggccagagttcaggtaaaacaagggg 262

                                                                       
Query: 301 ctggtgtcctcgttcttcagggttacttacactgctgggatctgaactagcttggatcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctggtgtcctcgttcttcagggttacttacactgctgggatctgaactagcttggatcag 202

            
Query: 361 a 361
           |
Sbjct: 201 a 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 761
Length adjustment: 9
Effective length of query: 352
Effective length of database: 752
Effective search space:   264704
Effective search space used:   264704
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)