BAC Information

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BAC

Clone NameMSMg01-377G07
Chromosome5 (Build37)
Map Location 85,109,639 - 85,110,056
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039608, LOC231368, Epha5, LOC100039489
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-377G07.T7 (MSMg01no377_g07.b1)MSMg01-377G07.TJ (MSMg01no377_g07.g1)
ACCAG482485AG482486
length778781
length of high quality
(start - end)
432 (51 - 482)415 (81 - 495)
definitionCHROMAT_FILE: MSMg01no377_g07.b1 PHD_FILE: MSMg01no377_g07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:33 2005CHROMAT_FILE: MSMg01no377_g07.g1 PHD_FILE: MSMg01no377_g07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:17:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCACCTGTTTGCACTTTATGTCTGGTATTAGAAACCCAGACA
AGTACCTTGAGTTAATGAAGTCATGGATCCTAGCAGGGAATCAATTACTG
CTACTTTGTTAGGCTAGCATAATTCCTTAATTACATTCTAAGACTTATTG
TTATATCCACATATAAGTGTAGCTATCACCCTCAGCAAAGAAGGTACACT
CTACAGTAAATGGAGACCATTAAAGGAAACCACAACTCCACACATCACAG
AGATCAATGGGTCATGGCAAGCTCATATTCACTGGATACATTTGCATCAC
AGATCCAGTATCTATGGCTTATAGGACAATGGAAAAGGGGACAGAATGAT
TGTTAGAATAAGAATACTAGGAAATCTCACGTAAGACTGACTTCTTAGGA
ATGACTACATAAACAAGATGTGAGAAATGGCATTATCACTAAACATATTA
ATAACAATGATAATAAATACTCAGGCATAGACAAGGAACTATAGGCAACT
AATGACTGTGGGAAAGGGAGAAAATTGAAGGCCTTGTTATTCCCAAACAT
AAGGCAAATACAAAACTTTTTCCCAATGGGGCCCTTTTTGTACTTTTTAA
AATACCCCCCCTTTGTATAAACTCTTATAGGCGCCACCCTTTTTCCCTTT
TACCCTTCGCCCATTGTTCTCCCCGTCTTTTCTCTCTATCGCTTTCTTTT
TTTTCCGCTCTCCCCCCCTCTCAGTTTT
NCCCCCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGAAAGTCTTTAATCTCTT
TCTCTTTATTCATTTTTATATTAAAAGCTTTCGTATGACCAATGACCCCA
TTCATATGACACTTAGTTGGGAATAAAAAAAATAATGCTCTCAGTAAGGA
TAATGCAACAGCTCAATTAAGACAGTAATTATAAGGAACACAGGTATTAG
GTATTTATTCTATTGTTTCTCTTGTAGAGATGGAACAGCACCAATCTCCA
TGACAGAGACATATATTATAATAAGTTTAGTATTTAAAAAATTCAGATTA
TATGATTATTAATGTAGTATTCTTTCCCTGAAGTAGTCCTAAAAAGAGAG
TGTTGGGAAACACTAGGAATTTAATCCAACAACCTGGTTACTCAGGCAGG
AAGATAGCACACCCTTAGTACACACTTTTATTCCCAAACAATGAAGATGC
GTGTAGATGGATGCACCTATATTTGAAAGTGATGTGTGATTGAGAGGAAC
ACAATGTAGAATTTGAGAGAAAATGATATGCCCAACCCACTCTCTTTAGA
AAAAACCAAAAGAAAGGTTATTTTTAAAAAACCAGGGCCAGGGAAAAAAA
AAAAATTAATGGCGGTTTTTTTTGTAAACCCGGTTTAAAAAACCGGGGGG
GAAAAAATTTCCCCCTCTCCCACATTCTTTTTGCCCACCATTCAGTGAGT
CCAACCCAAATTAATCCCCACCTAGAATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no377_g07.g1 MSMg01no377_g07.g1 CHROMAT_FILE:
MSMg01no377_g07.g1 PHD_FILE: MSMg01no377_g07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:17:33 2005
         (415 letters)



>mm_chr5_85109439_85110256
          Length = 818

 Score =  748 bits (387), Expect = 0.0
 Identities = 410/419 (97%), Gaps = 5/419 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagaaagtctttaatctctttctctttattcatttttatattaaaagctttcgtatgacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagaaagtctttaatctctttctctttattcatttttatattaaaagctttcgtatgacc 260

                                                                       
Query: 61  aatgaccccattcatatgacacttagttgggaataaaaaaaa---taatgctctcagtaa 117
           ||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||
Sbjct: 261 aatgaccccattcatatgacacttagttgggaataaaaaaaaaaataatgctctcagtaa 320

                                                                       
Query: 118 ggataatgcaacagctcaattaagacagtaattataaggaacacaggtattaggtattta 177
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggataatgcaacagctcaagtaagacagtaattataaggaacacaggtattaggtattta 380

                                                                       
Query: 178 ttctattgtttctcttgtagagatggaacagcaccaatctccatgacagagacatatatt 237
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 ttctattgtttctcttgtagagatggaacagcaccaatctccatgacaaagacatatatt 440

                                                                       
Query: 238 ataataagtttagtatttaaaaaa-ttcagattatatgattattaatgtagtattctttc 296
           |||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||
Sbjct: 441 ataataagtttagtatttaaaaaaattcagattatgtgattattaatgtagtatt-tttc 499

                                                                       
Query: 297 cctgaagtagtcctaaaaagagagtgttgggaaacactaggaatttaatccaacaacctg 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cctgaagtagtcctaaaaagagagtgttgggaaacactaggaatttaatccaacaacctg 559

                                                                      
Query: 357 gttactcaggcaggaagatagcacacccttagtacacacttttattcccaaacaatgaa 415
           | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gctactcaggcaggaagatagcacacccttagtacacacttttattcccaaacaatgaa 618


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 818
Length adjustment: 9
Effective length of query: 406
Effective length of database: 809
Effective search space:   328454
Effective search space used:   328454
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)