BAC Information

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BAC

Clone NameMSMg01-378I12
Chromosome5 (Build37)
Map Location 87,162,033 - 87,162,606
singlet/doubletsinglet
Overlap geneTmprss11e
Upstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c, Tmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b
Downstream geneA730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818, Ugt2b38, Ugt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-378I12.T7 (MSMg01no378_i12.b1)MSMg01-378I12.TJ (MSMg01no378_i12.g1)
ACCAG483356AG483357
length756756
length of high quality
(start - end)		574 (78 - 651)577 (81 - 657)
definitionCHROMAT_FILE: MSMg01no378_i12.b1 PHD_FILE: MSMg01no378_i12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:03 2005CHROMAT_FILE: MSMg01no378_i12.g1 PHD_FILE: MSMg01no378_i12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGACGAT
CCGCGGAATTCAAGAGGCTACCGAAGGGTATTGCTTACTGGATTGCTCCT
CATGGCTTGCTCAGACTATTTTCTTACAGAACCCAGGAGCACCAGCCCAA
GAGTGGCATCACCTACAATGGCTGAGCCCTCCCCCATCAATCACTAATTA
GGAATAAATGCCTTACAGCTGGTACTTATTGGAGGCATTTTCTCAAAAGA
GCTTTTCTCCTTTCAGATAATTCTAGTTTGTGTCAGGCTGATATAAATGT
AGACAGCACACTACTTACACATACTTATACTTTTTATTTTGTTTCTGCCT
TAGTTTAAAAATATAAAGAAGAGTGAAAATCGACAGGTCCTAACAATCCA
AGTTTTTGTCAACATAAAGTGCAGCGTGGGCAATGGGCAGAGGGTGGGAA
ATGAGGCACAATCCCCTTAGCTGAGTTCATAATGCCAAACATGGTGGTGT
AATCACCAAGGAGATGATTAACTGTTGTTTTTATTTATTTTATTTTTTGA
AGCAGAGTTTCTCTGTGCAAACCTGACAATTCTTGGACTGGCTCTGTAGA
CCAGGCTAACCTTGGACTTGGAGATTGGCCTGCCTCTGTTTCCTAAGTTC
TAGAATTAAAGGTGTTCACTACCACAGCAAATTTGCTTTTTTTATTTCTA
TTCTTTAATTAAAAATTAACATGTGCACGAATGTGTATGCCTGTGGAGGT
GTGCAN

NNCCACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCAAAT
GGCAGAGAAGCACCTGCAAAAATGTTCAACATCCTTAATCATCAGGGAAA
TGCAAATCAAAAAAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCT
AAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAG
AGGAACACTCCTCCATTGTCGGTGGGATTGCAGGCTTGTACAACCACTCT
GGAAATCAGTCTGGCGGTTCCTCATATAATTGGACATAGTACTACCGGAG
GATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGG
TAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCCTATTTATAATAG
CCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAG
AAAATGTGGTACATCTACACAATGGAGTACTAATCAGCTATTAAAAAGAA
TGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCC
TGAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTG
ATAAGTGGATATTAGCCCAAAACCTAGTATACCCAAGATATAAGATACAA
TTTCCTAAACACATGAAACTCAGAAAAATGAAGACTGAAGTGTGGACACT
ATGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no378_i12.b1 MSMg01no378_i12.b1 CHROMAT_FILE:
MSMg01no378_i12.b1 PHD_FILE: MSMg01no378_i12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:03 2005
         (574 letters)



>mm_chr5_87161714_87162687
          Length = 974

 Score = 1009 bits (522), Expect = 0.0
 Identities = 561/574 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtattgcttactggattgctcctcatggcttgctcagactattttcttacagaacccagg 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 893 gtattgcttactggattgctcctcatggcgtgctcagactattttcttacagaacccagg 834

                                                                       
Query: 61  agcaccagcccaagagtggcatcacctacaatggctgagccctcccccatcaatcactaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 agcaccagcccaagagtggcatcacctacaatggctgagccctcccccatcaatcactaa 774

                                                                       
Query: 121 ttaggaataaatgccttacagctggtacttattggaggcattttctcaaaagagcttttc 180
           ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 773 ttaggaaaaaatgccttacagctggtacttattggaggcattttctcaaatgagcttttc 714

                                                                       
Query: 181 tcctttcagataattctagtttgtgtcaggctgatataaatgtagacagcacactactta 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 713 tcctttcagataattctagtttgtgtcaggctgatataaacgtagacagcacactactta 654

                                                                       
Query: 241 cacatacttatactttttattttgtttctgccttagtttaaaaatataaagaagagtgaa 300
           ||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct: 653 cacatacatatactttttattgtgtttctgccttagtttaaaaatataaggaagagtgaa 594

                                                                       
Query: 301 aatcgacaggtcctaacaatccaagtttttgtcaacataaagtgcagcgtgggcaatggg 360
           |||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 593 aatcaacaggtcctaacaatccatgtttttgtcaacataaagtgcagagtgggcaatggg 534

                                                                       
Query: 361 cagagggtgggaaatgaggcacaatccccttagctgagttcataatgccaaacatggtgg 420
           ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 533 cagtgggtgggaaatgaggcacaatccccttagctgagctcataatgccaaacatggtgg 474

                                                                       
Query: 421 tgtaatcaccaaggagatgattaactgttgtttttatttattttattttttgaagcagag 480
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tgtaatcaccaaggaaatgattaactgttgtttttatttattttattttttgaagcagag 414

                                                                       
Query: 481 tttctctgtgcaaacctgacaattcttggactggctctgtagaccaggctaaccttggac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tttctctgtgcaaacctgacaattcttggactggctctgtagaccaggctaaccttggac 354

                                             
Query: 541 ttggagattggcctgcctctgtttcctaagttct 574
           ||||||||||||||||||||||||||||||||||
Sbjct: 353 ttggagattggcctgcctctgtttcctaagttct 320


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space:   543696
Effective search space used:   543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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