NCCTCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCACTTAATACAAGGATTAGTCAAAAAATCAATTTAATAAG
ATAAGAGAGGGGTCAAAATCAAGGGAACCTTGTTGTAATTCCAGTGTTTT
GAATGAGTTCTGATAATTTCTTTGTGCATGAAATAATTACATTTAAAGGT
AAAACAATGGAAATTACTTATTCCATCATGAGAATTCTAGATGGATGAGT
CAAAATCAAGTTTTCTTTTTTTTTTTTTTTTTTGGATTTTACATTTTTTT
TATTATGTATTTTCTTCAATTACATTTCCAATGCTATCCCAAAAGTCCCC
CCCACAATCCCCCCCCACTCCCCTACCCACCCATTCCCATTTTTTGGCCC
TGGCATTCCCCTGTACTGGGGCATATAAAGTTTGCCTGACCAATGGGCCT
CTCTTTCCAGTGATGGCCGACTAAGTCATCTTTTGATACACATGCATCTA
GAGTCAAGAGCTCTGGGGTACTGGTTAGTTCATAATGTTGTTCCACCGAT
ATTCTTGCATATATCTTTAATTCCCTGGATACTTTCTCTAAGTCCTCCAT
TGTAGGGCCCTGTGATCCCTTCCATTATTTTACTGTGAGTATTCCCTTTT
GTGTTTGCTAGCCCCCGGCCTAATCTTACTATTGGAAAACAAAATCTCTG
TCCCTTGTTACAAAACATTTCCTATTGTATGTCTTTGTTTCACTCATTCT
CCAGTATAATAACG

NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCATATTGGTTCCCTGAACTG
TAAAGTGAGGGCTATTATGGTTGGAAAGGCCAAATGGAAGCCTTTAGAGT
TGCCTCTGCCAAAGAAAATAGTGAATCAAAAACAGTATCGTATTCCTGGA
GGAATTGCAGAAATTACTGCCACTATCAAGGACTTGAAAGATGCAGGGGT
GGTGGTTCCCACCACATCTCCGTTTAACTCTCCTATCTGGCCAGTGCAGA
AAACAGATGGATCATGGAGAATGACAGTTGATTATCGAAAACTAAATCAG
GTGGTAACTCCAATTGCAGCTGCTGTACCAGATGTAGTTTCGTTACTTGA
GCAAATTAACACATCTCCTGGCACCTGGTATGCGGCTATTGATCTGGCAA
ATGCCTTCCTCTCAGTACCTGTTCATAAGGACCATTAGAATCTATTTGTT
TTCAGTTGTCAATGACAACAGTTTACCTTTACAGTTTTGCCTCTTGGTTA
TATTAACTCTCCCGTCCTGTGTCCCATTTTTCCCTTTTATTTTTTCTCAT
TTTTTTTCTCATTCCCTATATTATCTCTTGTTTTACCCTCATTGTTTATT
CCCACTCGTTCCTCACATATCCTCCCCTTATCTTCATTTACCCTTCTACC
ATTTTCCTTTTTTCCCCCCCCTCCCCCCTTTCCCTTTTTTTTTCTTTTCC
CCCCCTCTTTTTCTTG

Query= MSMg01no378_l04.b1 MSMg01no378_l04.b1 CHROMAT_FILE:
MSMg01no378_l04.b1 PHD_FILE: MSMg01no378_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:15 2005
         (415 letters)



>mm_chr5_54762600_54763415
          Length = 816

 Score =  714 bits (369), Expect = 0.0
 Identities = 402/415 (96%), Gaps = 5/415 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcacttaatacaaggattagtcaaaaaatcaatttaataagataagagaggggt 64
           |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 427 gaattctcacttaagacaaggattagtcaaaaaatcaatttaataagataagggaggggt 368

                                                                       
Query: 65  caaaatcaagggaaccttgttgtaattccagtgttttgaatgagttctgataatttcttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 caaaatcaagggaaccttgttgtaattccagtgttttgaatgagttctgataatttcttt 308

                                                                       
Query: 125 gtgcatgaaataattacatttaaaggtaaaacaatggaaattacttattccatcatgaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gtgcatgaaataattacatttaaaggtaaaacaatggaaattacttattccatcatgaga 248

                                                                       
Query: 185 attctagatggatgagtcaaaatcaagttttcttttttttttttttttttggattttaca 244
           |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 247 attctagatggatgagtcaaaatcaagttttcttttctttttttttttt-ggattttaca 189

                                                                       
Query: 245 ttttttttattatgtattttcttcaattacatttccaatgctatcccaaaagtccccccc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct: 188 ttttttttattatgtattttcttcaattacatttccaatgctatcccaaaagttccccac 129

                                                                       
Query: 305 acaatcccccc----ccactcccctacccacccattcccattttttggccctggcattcc 360
           ||  |||||||    |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 128 accctccccccgcccccactcccctacccacccattcccattttttggccctggcgttcc 69

                                                                  
Query: 361 cctgtactggggcatataaagtttgcctgaccaatgggcctctctttccagtgat 415
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  cctgtactggggcatataaagtttgcctgaccaatgggcctctctttccagtgat 14


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 816
Length adjustment: 9
Effective length of query: 406
Effective length of database: 807
Effective search space:   327642
Effective search space used:   327642
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)