BAC Information

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BAC

Clone NameMSMg01-379A20
Chromosome5 (Build37)
Map Location 118,537,087 - 118,537,548
singlet/doubletsinglet
Overlap geneFbxw8
Upstream geneSuds3, Taok3, Pebp1, LOC100042313, LOC100039359, BC023744, LOC667175, Wsb2, Rfc5, Ksr2, Nos1, Fbxo21, Tesc
Downstream geneHrk, Tmem118, 2410131K14Rik, LOC665162, Thrap2, LOC100039488
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-379A20.T7 (MSMg01no379_a20.b1)MSMg01-379A20.TJ (MSMg01no379_a20.g1)
ACCAG483756AG483757
length762758
length of high quality
(start - end)
462 (107 - 568)---
definitionCHROMAT_FILE: MSMg01no379_a20.b1 PHD_FILE: MSMg01no379_a20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:42 2005CHROMAT_FILE: MSMg01no379_a20.g1 PHD_FILE: MSMg01no379_a20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:19:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAC
TGTCTATCCCTCTGAATAATGAGCACTCTGGGGTCTATAGAAGTACAAGC
ACAACTCAATAGCTGATGCTAGTGCTGACCCACCCCCGCTAACCCAGGAC
TGACAGAAGACAGATGTGCAGGCCACGTTAATAAGGCACAGTCTGGGAAA
GAGCAGGAGTCCTCCACCGTAACTGCTGGGGTCATCTGAGCACAGTAAAC
ATCTGAAATAGTTGGAGGCTGGGCCCACACCGGCCATGAGCTGTGTTCTT
ACTCTCCCTCTCTCCTTCCCTGCTCAACCGTCTGGACCGGGTGGGAGCAC
GCAGCTCACCCCATAGTCACTGTTTTCACACCTGGAAAGAGGCAAACATT
TCCACCAGGTCCCCCCAGATCCCGATGCTGATTTTTAACACTGACAAACC
TAGCTGCTGTCTGGGCAATATTTACTCCGAGACTCATCTGGCACAGAGAC
ATCAAAGCCATCCCATCTGTGCTGGGGAAATAATCCCAACAGTCAACTCC
AAGTTCAGTCTCCCAAGTGTGTAGGATGGTGAACCAGGACAGGAAGTCTA
CATATAACCAGGGAAGTCACTGGAATAATTATACCCTAGATAAAAACCAA
TCTTAATTCCCAAGCCCCCTAAAGGGCCAGTGGGCCTGATATATGTCCCC
ATCAAGGTTTTTAAACGCCGCCTATGTCCTCCTTATACCGATTAGCTAAT
TTTAAAATTTTG
GTGGGAGGCCTGGGGGCCGCCTGTTTCCGACTGAGGGNGAACNANAGAAG
TTCCCAAGAGGGGGGCACCANCNTGGGCACATGGCCAGGGGACATCAGAC
AAGTCTGTTGCCCGCACCTGCTTTCTGCTGCACTATGGCATGAGAGGTGA
GGGTAGAATTTTCCACTCTTGTGAGTCTTCATGTCTGAGAGAACAGCTGC
AGATTCTCGGGCATTTGGGATGCTATAGGCTTGGTTGGTTTTTTCCACCT
GCAGGGAGACGACTTAATCTTCATGTCACCTGATCCAGAGGCTTTTCCAG
CTGACTGTTGTTTTTTTAACCNGACCCATTTCCGAGAGCACTGTATTGTT
TTTTTCCACCCCCAGCACTGGGAAAGCCAGGGCTTTATAAACGTCCACTT
TCCCGTCCCCTCCAGGATCTGATAGGACCAAGGAGCGACGATTCACGATG
CATAGAGTCCGACTCCTGAAGGACATGCACCTTGACAAGGAATAGCTTAC
AGCCACTAGCTGCTTGGACAAAGTAGGTCATTTCCTTCATGAAACAGGCT
CGGGCAGCCACCTGCAGACACAGAGCACTTCACCTTTGTGATCCTCTTGC
CCCTGCCAACAATCCGCGTGAGAGCACACCACCGCACCCCGGTTTTTTTT
TTTTTTTTTGTACACAGCACCGCCTGTTTGGTTCGTAATCCCCGCCCGGT
ACCCCACTCTGGCCAAACCTGCGGCCCCCCCTTATAAACACCCTCTCTCC
CCCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no379_a20.b1 MSMg01no379_a20.b1 CHROMAT_FILE:
MSMg01no379_a20.b1 PHD_FILE: MSMg01no379_a20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:19:42 2005
         (462 letters)



>mm_chr5_118536887_118537748
          Length = 862

 Score =  886 bits (458), Expect = 0.0
 Identities = 461/462 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caatagctgatgctagtgctgacccacccccgctaacccaggactgacagaagacagatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caatagctgatgctagtgctgacccacccccgctaacccaggactgacagaagacagatg 260

                                                                       
Query: 61  tgcaggccacgttaataaggcacagtctgggaaagagcaggagtcctccaccgtaactgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcaggccacgttaataaggcacagtctgggaaagagcaggagtcctccaccgtaactgc 320

                                                                       
Query: 121 tggggtcatctgagcacagtaaacatctgaaatagttggaggctgggcccacaccggcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggggtcatctgagcacagtaaacatctgaaatagttggaggctgggcccacaccggcca 380

                                                                       
Query: 181 tgagctgtgttcttactctccctctctccttccctgctcaaccgtctggaccgggtggga 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 tgagctgtgttcttactctccctctctccttccctgctcaaccgtctggacctggtggga 440

                                                                       
Query: 241 gcacgcagctcaccccatagtcactgttttcacacctggaaagaggcaaacatttccacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcacgcagctcaccccatagtcactgttttcacacctggaaagaggcaaacatttccacc 500

                                                                       
Query: 301 aggtccccccagatcccgatgctgatttttaacactgacaaacctagctgctgtctgggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggtccccccagatcccgatgctgatttttaacactgacaaacctagctgctgtctgggc 560

                                                                       
Query: 361 aatatttactccgagactcatctggcacagagacatcaaagccatcccatctgtgctggg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatatttactccgagactcatctggcacagagacatcaaagccatcccatctgtgctggg 620

                                                     
Query: 421 gaaataatcccaacagtcaactccaagttcagtctcccaagt 462
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaaataatcccaacagtcaactccaagttcagtctcccaagt 662


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space:   385104
Effective search space used:   385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)