BAC Information

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BAC

Clone NameMSMg01-380D13
Chromosome5 (Build37)
Map Location 19,091,077 - 19,091,409
singlet/doubletsinglet
Overlap geneMagi2
Upstream gene4921504A21Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-380D13.T7 (MSMg01no380_d13.b1)MSMg01-380D13.TJ (MSMg01no380_d13.g1)
ACCAG484649AG484650
length736745
length of high quality
(start - end)		550 (40 - 589)548 (68 - 615)
definitionCHROMAT_FILE: MSMg01no380_d13.b1 PHD_FILE: MSMg01no380_d13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:13 2005CHROMAT_FILE: MSMg01no380_d13.g1 PHD_FILE: MSMg01no380_d13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:21:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
ACCTGTTCCCGATGTGTGTTCTATTACCTTCCCCACTGCACATGTAAGTC
TCCTCCCAATACTGATTTTCCAGTTTTTATCCATACCCACTCATACCGAA
GTACATATACAAAAGAAAAAAAATCTACCACTACCACCACTACCACCACC
ACCAAAACCACCACCACCACCACAATCACCACCACCACCACCAACAACAA
CAAAAAACCCCAGAAGCTAGGGTATTATTGAACAATACATAGTTGGTTTT
TTTTTTTATTTTTTTTCTGGATCTCAGTTACATCACATAATACATTTTTT
TAGTCCCATCTCCTTTCTTACAAATTTCTTGACTATGTCTTTCCTTATGG
CTAAATAAAATTCTATTGTTTATATATACCACATTTCCATTACACATTAA
TTTGTTAATGGGCATCTAGACTAATTCTATTCTTTGATGTTATGAATAGA
GTAGCAATAACTACCAATACACAGGAACCTCAGAGATAACATATAGATCC
ACTTAGGTATATAAACAGGAGTGGTACAATGGACCTCAGAGTAGACCCAT
TTTTAGTTAGATTTGATTTGGTTGAGAAATGTGTGCACTCATTTCCATAG
TGGCTCCCTCAGCACTGACAAGCAGTTTAAAGACTCTTAATGCTAGTGTT
TCATGGTTAAGAACTCTTCTCCTTNAAACTCTGTCT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTCTGTTTAGACCTTTACTCCATTTTTAGTTGGA
TTATTTAGTTTATTGACGTCTAGTTTCTTGAATTCTTGATGTATTTTGGA
TGTTAGCCATCTGTCAGATGTAGAATTGGTAAAAGGTCTTTTCCCATTAT
GTGGGCTGCCATTTTGTCCAAATGACAGTGTTCTTAGCCTTACTGAAGCT
TTTTAGTTTCACAAGAGTCTATTTATTAATTGTTGATTGCATGCTATTTG
TGTTCTGTTCAGGAAGTTTTCTATTGTGTCAAGGCACTATTCCCCACTTT
TCTAAAAGGTTCAGTGTAGCTGGTTTTATGTTGAGATCTCTGATCCACTT
GGACTTGAGTTTTGTACAGGGTGATAGACATGGATCTATTTGCATCCTGT
TAGAACATCACCCTTTGTTGAATATGCTGTCCTTTTTCCCCATTGTATAT
ATTCTTTATCAAAAAATGGGATATCCATAATACTTTCTACAGAGCTGTGT
ATGTGGGTGATTGAAAGTCTTGCTGGGTATAGTAGTCTAGGCTGGCATCT
ATTGTCTCTTAAGAGGCTACAAGACATCTCTCTAGGCCCTTCTTTTAAAG
TCTTTCTTGACATTTGAGTGTAATTCTAATATGTCTGCCTTTAATAATAC
TTGGCCTTTTTCCCTTGCAGCTTTTATATTCTTTCTTTGTTCCGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no380_d13.b1 MSMg01no380_d13.b1 CHROMAT_FILE:
MSMg01no380_d13.b1 PHD_FILE: MSMg01no380_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:21:13 2005
         (550 letters)



>mm_chr5_19091077_19092026
          Length = 950

 Score =  567 bits (293), Expect = e-166
 Identities = 322/335 (96%), Gaps = 8/335 (2%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccacctgttcccgatgtgtgttctattaccttccccactgcacatgtaagtctc 63
           ||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ggaattccacctgctcatgatgtgtgttctattaccttccccactgcacatgtaagtctc 274

                                                                       
Query: 64  ctcccaatactgattttccagtttttatccatacccactcataccgaagtacatatacaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ctcccaatactgattttccagtttttatccatacccactcataccgaagtacatatacaa 214

                                                                       
Query: 124 aagaaaaaaaatctaccact------accaccactaccaccaccaccaaaaccaccacca 177
           ||| ||||||||||||||||      |||||||| |||||||||||||||||||||||||
Sbjct: 213 aag-aaaaaaatctaccactaccaccaccaccaccaccaccaccaccaaaaccaccacca 155

                                                                       
Query: 178 ccaccacaatcaccaccaccaccaccaacaacaacaaaaaaccccagaagctagggtatt 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 ccaccacaatcaccaccaccaccaccaacaacaacaaaaaaccccagaagctagggtatt 95

                                                                       
Query: 238 attgaacaatacatagttggtttttttttttattttttttctggatctcagttacatcac 297
           ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 94  attgaacaatacatagttggtttttttttat-ttttttttctggatctcagttacatcac 36

                                              
Query: 298 ataatacatttttttagtcccatctcctttcttac 332
           |||||||||||||||||||||||||||||||||||
Sbjct: 35  ataatacatttttttagtcccatctcctttcttac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space:   507600
Effective search space used:   507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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