BAC Information

Click to search

BAC

Clone NameMSMg01-381E14
Chromosome5 (Build37)
Map Location 91,826,463 - 91,826,942
singlet/doubletsinglet
Overlap geneBtc
Upstream geneAlb1, Afp, Afm, LOC100040105, LOC622307, Rassf6, Cxcl5, Ppbp, Cxcl4, Gm1960, Cxcl15, Cxcl1, Cxcl2, 1110019K23Rik, Epgn, Ereg, Areg
Downstream gene9130213B05Rik, EG665860, LOC665864, LOC100040506, Ppia-ps5_892.1, Rchy1, Thap6, Gm1045, Cdkl2, LOC100040574, G3bp2, Vdp, LOC100040605, U90926, Ppef2, Asahl, Sdad1, Cxcl9, Cxcl10, Cxcl11, LOC100040228, Art3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-381E14.T7 (MSMg01no381_e14.b1)MSMg01-381E14.TJ (MSMg01no381_e14.g1)
ACCAG485463AG485464
length795784
length of high quality
(start - end)		199 (39 - 237)479 (69 - 547)
definitionCHROMAT_FILE: MSMg01no381_e14.b1 PHD_FILE: MSMg01no381_e14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:38 2005CHROMAT_FILE: MSMg01no381_e14.g1 PHD_FILE: MSMg01no381_e14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:22:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGAATTCTTA
TGGTACCAATACCAATGAAGACTCATGTAAGATCTGTCATTTACACAGAG
TTTACAATCTAAAGGATAGACTAAATATATGCAGCAAGAGAGACAGAGAG
ACAGACAGATACAGATAAAGATAGACAGAGACAGATTGAGACAGAGAGTC
ACACAGAGACAGAAAGAAAGGAGGGAGAGGGGGAGGGGAGGTTTTTTTTT
TTGNTTNNNNTTTGGNGGTTNNGTGGTTTTTNTTTTGTTTTGTTGTGCCN
TTTNTGGTTTTTTTTTTTTTGTNNGNCGGNGGGGGTTTTTGTTTTTCTTT
TTTTCTCTCTTTTTCCCCGCCCCCGCCCCCCCCTTTTTCCCCCCCCCTTT
TTTCCCCCTTTCTCCCTCCTCCTCTTCCCCCCCTTCTCTTTTTCTTTCCC
CCCCCCTTTCTTCCTTCCCGCTTTTCGTCTTTTTCCCCTCTTCCCTTCCC
TCTCCCCGCTTTTTTTTTTTTTCCCTTTTTGTTCTCCCCTCCCCCTCTTT
TTCTCTCCCCCTCTTCGCTTTTTTTCTTTTTTTCTTTTTCCCTCCTTTTC
TCTCGTTCTCCTTTTTCTTCCCTTCTCCCTTTTCCCCTTTCCTTTTTTCC
CCCCCCTCCTTTCCTTCTCTTCCTCCCCCTTTTCTTTCTTCTTTTTTTTT
CTCGTCGCCCTTTTTTCTCTTTTCTCTTCCCCCTTCTTTCTTTTCGCCGC
CTCTTCCTTTTTCCTCTTTTTTCTTTCCTTTCCCCCTTCTTCTTT

AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTATTTGTTCTAAATCACACATGAAAATGGT
AGAGCCACCAACTGCCTAGCTTACAGCTAGGGTACACAAACCTTTCTCCT
CCTTTCCTTGGAGTGAGCTGTGTGGTCCAACTGTTCTGAATATGAGGGGA
TACAGGACAGATCAGCTAGGAGAAAGGCCAAAGGATCTTCAGCACAGATA
AATGAAGACATTTTGGAGGCCTTGGAGTTGACCCCTTCCTAAGTTTCTTC
TTAGTAGTTTGCCCTCTAGGCTTCTGATGGACACAGTATTTAGGTCTCTG
CTTGGCCTATGGAATCTCCGCATTGTTACTCTTTATATTTCGGGGGAATA
TTTGTAAAGCCATCTCTATAGTTTTTTATCTCATTTTCAGCACAAAACTG
ACCAAAAATGTAGTACAGGACAGGCTCTGGTCTGAAAAAATGAGAATTTA
TTTTATCTATAANACATTACTCCTAGTATAGGAGCTAGACGAGGAATATA
GATATATGGATCCTGTAANGAGTCCATGTTTCTGACATTATTGAGNATGA
ATTTTAAAGTGGGGAAGGGAGGTTCCGAACCTAATAGATAAGCCCCACCG
CTGAATGGGAAAACAGGACCCTTAAAGCCAAAATGGCCGGGGGGTTTAAA
ATCCCGCGGGGAGCCCAAATTCCTGGATATTTTTTAAAAAGAGAATCTTC
TAAAGTGTTCTTCCCCCCCGGAGGGGGACCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no381_e14.g1 MSMg01no381_e14.g1 CHROMAT_FILE:
MSMg01no381_e14.g1 PHD_FILE: MSMg01no381_e14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:38 2005
         (479 letters)



>mm_chr5_91826263_91827142
          Length = 880

 Score =  830 bits (429), Expect = 0.0
 Identities = 467/480 (97%), Gaps = 1/480 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttatttgttctaaatcacacatgaaaatggtagagccaccaactgcctagcttacagct 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 680 tttatttgttctaaatcacacatgaaaatggtagagccaacaactgcctagcttacagct 621

                                                                       
Query: 61  agggtacacaaacctttctcctcctttccttggagtgagctgtgtggtccaactgttctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 agggtacacaaacctttctcctcctttccttggagtgagctgtgtggtccaactgttctg 561

                                                                       
Query: 121 aatatgaggggatacaggacagatcagctaggagaaaggccaaaggatcttcagcacaga 180
           || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 560 aacatgaggggatacaggacagatcagctaggagaaaggtcaaaggatcttcagcacaga 501

                                                                       
Query: 181 taaatgaagacattttggaggccttggagttgaccccttcctaagtttcttcttagtagt 240
           ||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 500 taaatcaacacattttggagggcttggagttgaccccttcctaagtttcttcttagtagt 441

                                                                       
Query: 241 ttgccctctaggcttctgatggacacagtatttaggtctctgcttggcctatggaatctc 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 440 ctgccctctaggcttctgatggacacagtatttaggtctctgcttggcctatagaatctc 381

                                                                       
Query: 301 cgcattgttactctttatatttcgggggaatatttgtaaagccatctctatagtttttta 360
           |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 380 cgcattgttactctttatattttgggggaatctttgtaaagccatctctatagtttttta 321

                                                                       
Query: 361 tctcattttcagcacaaaactgaccaaaaatgtagtacaggacaggctctggtctgaaaa 420
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tctcattttcagcacaaaattgaccaaaaatgtagtacaggacaggctctggtctgaaaa 261

                                                                       
Query: 421 aatgagaatttattttatctataanacat-tactcctagtataggagctagacgaggaat 479
           |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 260 aatgagaatttattttatctataaaacatatactcctagtataggagctagacgaggaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 880
Length adjustment: 10
Effective length of query: 469
Effective length of database: 870
Effective search space:   408030
Effective search space used:   408030
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |