Query= MSMg01no381_e19.b1 MSMg01no381_e19.b1 CHROMAT_FILE:
MSMg01no381_e19.b1 PHD_FILE: MSMg01no381_e19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:39 2005
(566 letters)
>mm_chr5_4356458_4357429
Length = 972
Score = 948 bits (490), Expect = 0.0
Identities = 547/569 (96%), Gaps = 8/569 (1%)
Strand = Plus / Minus
Query: 5 gaattcttcagataccatatgccatcagatgggtgtcacagtcatgtcctgaagagattt 64
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 gaattcttcagaaaccatatgccatcagatgggtgtcacagtcatgtcctgaagagattt 713
Query: 65 ctttgccttatctagatgttctaacacaaatggtcacaggagaggagcaggaccagggcc 124
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 712 ctttgccttatctagatgttctaacacaaattgtcacaggagaggaacaggaccagggcc 653
Query: 125 tggacacacccca-ctcgaggggg-----ggcaggaaggcctgaggacccagggctggct 178
||| ||||||||| | ||||||| ||||||| |||||||||||||||||||||||
Sbjct: 652 tggccacaccccatgt-gagggggggggaggcaggagggcctgaggacccagggctggct 594
Query: 179 acaccccagttactttcacttcaatcctagtcactttgagctagcagaattttgtcccat 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 acaccccagttactttcacttcaatcctagtcactttgagctagcagaattttgtcccat 534
Query: 239 ggtgtggtctctgcttcaggcagaaatggagcaaaactatttttgatatcaactctaatt 298
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 533 ggtgtggtctctgcttcaggcagaaatggagcaaaacaatttttgatatcaactctaatt 474
Query: 299 tcctttcttccaattctaatttcccttcccactcaaaaa-ttatttgttacaatttattc 357
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 473 tcctttcttccaattctaatttcccttcccactcaaaaatttatttgttacaatatattc 414
Query: 358 tgaaagttgtcactggaaaacagcaaagaaatagagaacaaataagccatcatatgtatt 417
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tgagagttgtcactggaaaacagcaaagaaatagagaacaaataagccatcatatgtatt 354
Query: 418 agctcagacctctgccctacaactcaggacagctgggttcattcatgtctcatgagaaaa 477
||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 353 agctcagacctctgccctacaactcagaacagctgggttcattcacatctcatgagaaaa 294
Query: 478 gcatttataatactgtctgagtctatttcataatacaggacagcatatcacatagtggat 537
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 293 gcatttataatactgtctgagtctatttcataatacagaacagcatatcacatagtggat 234
Query: 538 acttataanaagagtacatttatttctca 566
|||||||| ||||||||||||||||||||
Sbjct: 233 acttataaaaagagtacatttatttctca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 972
Length adjustment: 10
Effective length of query: 556
Effective length of database: 962
Effective search space: 534872
Effective search space used: 534872
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no381_e19.g1 MSMg01no381_e19.g1 CHROMAT_FILE:
MSMg01no381_e19.g1 PHD_FILE: MSMg01no381_e19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:22:39 2005
(518 letters)
>mm_chr5_4354776_4355692
Length = 917
Score = 955 bits (494), Expect = 0.0
Identities = 512/518 (98%), Gaps = 1/518 (0%)
Strand = Plus / Minus
Query: 1 ctgcatgggttcaaacactacttccctgtgttgaaaagaaaagatagagatattgaatgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 ctgcatgggttcaaacactacttccctgtgttgaaaagaaaagatagagatattgaatgc 658
Query: 61 tgttaatgtgcttaaagtcccgttcaccaaggttcttatctatcccgtcattagtatcct 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 657 tgttaatgtgcttaaagtcctgttcaccaaggttcttatctatcccgtcattagtatcct 598
Query: 121 cacctaaatccccaccatgatatactttgtaattacaatggtgttttttgagatcaaagc 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 597 cacctaaatccccaccatgatatactttgtaattacaatggtg-tttttgagatcaaagc 539
Query: 181 acagggctgatgcacaggcaattaatcaccgggagagatctgggatgagcagagtgcttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 538 acagggctgatgcacaggcaattaatcaccgggagagatctgggatgagcagagtgcctt 479
Query: 241 cccatcgaacacgctcctgtcatgtcagtggagggtccactcaacaggagtgttcacagc 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cccatcgaacatgctcctgtcatgtcagtggagggtccactcaacaggagtgttcacagc 419
Query: 301 ccacaatttgatgttatatgttggtgtttggtcagacttcagctgtacacgatcacctac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ccacaatttgatgttatatgttggtgtttggtcagacttcagctgtacacgatcacctac 359
Query: 361 aaatccgacagccctgttaaccatatcaaagggaaagcaagcattcagcagcatcgagag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 aaatccgacagccctgttaaccatatcaaagggaaagcaagcattcagcagcatcgagag 299
Query: 421 tctgtcctctccacccgagtgtttctgggcagtagctatgagctgagtacatctgagaag 480
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tctgtcctctccaccggagtgtttctgggcagtagctatgagctgagtacatctgagaag 239
Query: 481 ggttagggatgggaaagtaaaattaaataaattaattg 518
||||||||||||| ||||||||||||||||||||||||
Sbjct: 238 ggttagggatggggaagtaaaattaaataaattaattg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 917
Length adjustment: 10
Effective length of query: 508
Effective length of database: 907
Effective search space: 460756
Effective search space used: 460756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
