BAC Information

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BAC

Clone NameMSMg01-381L12
Chromosome5 (Build37)
Map Location 127,643,192 - 127,643,578
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040327
Downstream geneTmem132c, Slc15a4, Glt1d1, Tmem132d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-381L12.T7 (MSMg01no381_l12.b1)MSMg01-381L12.TJ (MSMg01no381_l12.g1)
ACCAG485793AG485794
length752765
length of high quality
(start - end)		387 (60 - 446)247 (71 - 317)
definitionCHROMAT_FILE: MSMg01no381_l12.b1 PHD_FILE: MSMg01no381_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:13 2005CHROMAT_FILE: MSMg01no381_l12.g1 PHD_FILE: MSMg01no381_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:23:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTCAGT
TCCTTCCACCCAACTGGGAGCAGACAACCACATGTAACTTCAGCTCCAGG
GGAATCTGACACCCTCTTCTGGCCTCTATGGGCACTGCACTCATGTGCCC
AGAGGTTTCTGCCTCTACATATTAAATACTGTAAATAATATGTACCCTCT
GACCCTTTGAGATCAGAAAACAAGACCATATAGAAACAGCTTTCAACAGA
CCTAGGAATCTATAAAGTTTTTAAAAGTTGTCTTACTTTGCTGTTTGAAG
ATGGGTGGTGTGTATTTTCTTGGAGTCACATCTTACCTTTGCTTGTGTCT
GCCCTTGGCCATGGGTATTTCTCCTGGGTTTGCCATGCTTGGAGATCTAA
CAAGCTCTACCAAACTCTCACTGCCTCACATGCTGGACTGTGTTGCCATT
TATCATGCTCACCTGCTACCTAACCAACTACCTAACTTCCCATCCCTCAT
CCTTTTCCCTTAAGCCCTCCTTCCTTTTTCTTTTTCCTCCCTCTCTCCAC
CTTTCTTTCAACTTCAGACTTTGTTTGGGATTTTTCAATGCCTCTCCGCC
TCTTCCCTTCCATATCTCCCCCCTTTCCCTCCTTTTTTTTGGCCAATCTT
TCCTTTCCCCCACACCCCCGTTTTACACTTGCTTCCCCCTCCTTTTCCCC
TCCCCTGTTCCCCCTCTTTTTTTCCCCCATTTTTTTCCTTTCTCTTCTTT
TT

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAACAGGTAGAAGGTGTAGTGGCTATTCCTG
GTTCTCAACTTGACTATATCTGGAATGAACTACAATCCAGAATTGGAAGG
CTCACTAGTGATGCTAATCTGGAGGCTGGGAGATACAAGTTTCTGACCTG
GATCTTGGTATGAAGATCTTGAGGCATGGTGGCTATGAATTCCAGAAGAT
TAAGATAGGGAGATCTCCAAGTTCAATGTCATCTGGGATTAACGGTGTGG
TGGCATCTTGGCCACACCTTCTGCTGGAGACCTACATAAGGACATTGGAA
GAAGGAAGTCTCTCACTCCTTCAACTGCTTGCCTTGTGGGACTGAGCAAC
TGCTAGATCCTTGGACTTCCATTCACAGCTGCCGCTGACCACTGTTGGGA
GTTGGACTGCAGACTGTAAGTCATCAATAAATTCCTTTACTATACAGAGA
CCACCCATAAGTTCTGTGACTCTAGAGAACCCTGACTAATACAGAATGGC
AGGGAGGAATAACGGCTTTTAAGACAGGAAACCCTCCATACCTCTCTCAC
CCTGTGGGTTATCCCTTCTTCTTGGGAAAAGGAAAAATTCATAATTCCTT
CAGATTTAATGTTTAATCTCCCCATAAAACCTTTTTCTCCCCATTGGCTC
TCCCTCCTATCTTGTCTTTACCTTCTTCTCCTCCTTTCTCCCTTTTTTTT
TCCTCTTTCCCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no381_l12.b1 MSMg01no381_l12.b1 CHROMAT_FILE:
MSMg01no381_l12.b1 PHD_FILE: MSMg01no381_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:13 2005
         (387 letters)



>mm_chr5_127642992_127643778
          Length = 787

 Score =  733 bits (379), Expect = 0.0
 Identities = 385/387 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccaactgggagcagacaaccacatgtaacttcagctccaggggaatctgacaccctcttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccaactgggagcagacaaccacatgtaacttcagctccaggggaatctgacaccctcttc 260

                                                                       
Query: 61  tggcctctatgggcactgcactcatgtgcccagaggtttctgcctctacatattaaatac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggcctctatgggcactgcactcatgtgcccagaggtttctgcctctacatattaaatac 320

                                                                       
Query: 121 tgtaaataatatgtaccctctgaccctttgagatcagaaaacaagaccatatagaaacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtaaataatatgtaccctctgaccctttgagatcagaaaacaagaccatatagaaacag 380

                                                                       
Query: 181 ctttcaacagacctaggaatctataaagtttttaaaagttgtcttactttgctgtttgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttcaacagacctaggaatctataaagtttttaaaagttgtcttactttgctgtttgaa 440

                                                                       
Query: 241 gatgggtggtgtgtattttcttggagtcacatcttacctttgcttgtgtctgcccttggc 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gataggtggtgtgtattttcttggagtcacatcttacctttgcttgtgtctgcccttggc 500

                                                                       
Query: 301 catgggtatttctcctgggtttgccatgcttggagatctaacaagctctaccaaactctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catgggtatttctcctgggtttgccatgcttggagatctaacaagctctaccaaactctc 560

                                      
Query: 361 actgcctcacatgctggactgtgttgc 387
           ||||||| |||||||||||||||||||
Sbjct: 561 actgcctaacatgctggactgtgttgc 587


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 787
Length adjustment: 9
Effective length of query: 378
Effective length of database: 778
Effective search space:   294084
Effective search space used:   294084
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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