Query= MSMg01no381_p16.b1 MSMg01no381_p16.b1 CHROMAT_FILE:
MSMg01no381_p16.b1 PHD_FILE: MSMg01no381_p16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:33 2005
(473 letters)
>mm_chr5_141249130_141250010
Length = 881
Score = 849 bits (439), Expect = 0.0
Identities = 468/481 (97%), Gaps = 8/481 (1%)
Strand = Plus / Plus
Query: 1 gctggcctcgtcaaggccatggcctgctccatgtgttggattccacttgagtgtgcttgg 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gctggcctggtcaaggccatggcctgctccatgtgttggattccacttgagtgtgcttgg 260
Query: 61 gattttctcagattctgagtaaaccctggctgttcagagggcagttgtggggcctctccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gattttctcagattctgagtaaaccctggctgttcagagggcagttgtggggcctctccc 320
Query: 121 cttcctcaaagcatatgccagtgagtcctgtagagactgatcagagcctgactggcctca 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 cttcctcaaagcatatgccagtgagtcctgtagagactgatcagagcatgactggcctca 380
Query: 181 accctgtcctcttagttggtgaaatccttggagacttaggaagcattaattatgtgaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accctgtcctcttagttggtgaaatccttggagacttaggaagcattaattatgtgaaat 440
Query: 241 gcccatccaggctgggggcacagtgctgaggtaggtggactggaaagcaggaatctactg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcccatccaggctgggggcacagtgctgaggtaggtggactggaaagcaggaatctactg 500
Query: 301 tgtcaccaagcaa-----gacctttcttaaaaaaaaaaaaaaaa--gcatgtgggtccca 353
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 tgtcaccaagcaaatgaagacctttcttaaaaaaaaaaaaaaaaaagcatgtgggtccca 560
Query: 354 gaaacctaagtgactctctcaaaccatagtttgtgacatctataaccatttgtgttcaag 413
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 561 gaaacctaagtgactctctcaaaccacagcttgtgacatctataaccatttgtgttcaag 620
Query: 414 cttaaggaaaataaaagttgggtttttttgttgttgttttttttttcccc-aggctgatg 472
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 621 cttaaggaaaataaaagttgggtttttttgttgttgttttttttttcccccaggttgatg 680
Query: 473 g 473
|
Sbjct: 681 g 681
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 881
Length adjustment: 10
Effective length of query: 463
Effective length of database: 871
Effective search space: 403273
Effective search space used: 403273
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no381_p16.g1 MSMg01no381_p16.g1 CHROMAT_FILE:
MSMg01no381_p16.g1 PHD_FILE: MSMg01no381_p16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:23:33 2005
(471 letters)
>mm_chr5_141433979_141434849
Length = 871
Score = 911 bits (471), Expect = 0.0
Identities = 471/471 (100%)
Strand = Plus / Minus
Query: 1 actgtgtattccagcctggactcaaactcacaatcctcctgcttcagtcacccaaatgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 actgtgtattccagcctggactcaaactcacaatcctcctgcttcagtcacccaaatgct 598
Query: 61 gtggttcctacagtcctgatttgtgactgtcagttaggtctaggtaatccataatattat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 gtggttcctacagtcctgatttgtgactgtcagttaggtctaggtaatccataatattat 538
Query: 121 tctaatcttccatgaccttgctttttatcttctagccctaacatttagcaaaggaggacg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 tctaatcttccatgaccttgctttttatcttctagccctaacatttagcaaaggaggacg 478
Query: 181 attgaactggataaatactgtacaaggaaatccacaaagctttgtgttggctttcatcag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 attgaactggataaatactgtacaaggaaatccacaaagctttgtgttggctttcatcag 418
Query: 241 acacaaggatccaagttcagtcctcagtgcccatatttaagaaaaatatggggtcctccc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 acacaaggatccaagttcagtcctcagtgcccatatttaagaaaaatatggggtcctccc 358
Query: 301 ttaagagatgaagatgggcatatccctgggtcccactcactggcaagccaagaaaatcag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 ttaagagatgaagatgggcatatccctgggtcccactcactggcaagccaagaaaatcag 298
Query: 361 tgagttcccggccagtgagggacccccatgtcaggaaataaagaagacagtgcctgggaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 tgagttcccggccagtgagggacccccatgtcaggaaataaagaagacagtgcctgggaa 238
Query: 421 acggcacccaagattgacctctgacctccacttacatgagcacacgcacac 471
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 acggcacccaagattgacctctgacctccacttacatgagcacacgcacac 187
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space: 396921
Effective search space used: 396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
