BAC Information

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BAC

Clone NameMSMg01-382F05
Chromosome5 (Build37)
Map Location 46,643,829 - 46,810,463
singlet/doubletdoublet
Overlap geneEG666103
Upstream geneLOC100040737, Qdpr, EG624224, Lap3, LOC100040762, Med28, 9630031F12Rik, 9630001P10Rik, 1600023N17Rik, Lcorl, LOC100041576
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-382F05.T7 (MSMg01no382_f05.b1)MSMg01-382F05.TJ (MSMg01no382_f05.g1)
ACCAG486255AG486256
length748752
length of high quality
(start - end)		567 (30 - 596)523 (57 - 579)
definitionCHROMAT_FILE: MSMg01no382_f05.b1 PHD_FILE: MSMg01no382_f05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:02 2005CHROMAT_FILE: MSMg01no382_f05.g1 PHD_FILE: MSMg01no382_f05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:24:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,810,133 - 46,810,463)(46,643,829 - 46,644,351)
sequence
GCTXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCACTATTTGC
TAGACTAATTCTTATTCTTTTCTACTGACTTAGAGGACTAAGGCACATAG
ACAGTGACAATGAGGTTTTTATTATTGAAGATATTGTTCTCTTTATTTCA
TATCACCTCCCTATTTCATAGTTCCCAAATATAAAAGATAAGAGGCAAGA
CACATCTTTATCACGTGATCTCATTTAACATGGTGTCTTCTGGTTCCATC
CTTTTCCTACAAATGATAATAGCTCATTCTTTTTAAAGACTGAATAATAC
TTTCTTGTATGCACATAGCATATTTTCTTTGTCCATTCATCTAAGACTGG
CTCTTAGGGTAAGTTCACATTGTGGCTTTTGTGAATAGTGCCACAATAAA
CACAAGGCCACACATGCCTCCTTTGTATGGTGACGATACCTCCTGATATA
CACCCAGGAATGGGATAGCTGGGTCACACAGTAGCTCTATGTTTGACATT
CGAAGGAGTGTCCATACTTTATTCTAAGAGCCCTGCACTAATTTACACTC
TTTCCAACACTCTCCAATACTTAGATCTTAGAAAGCCATTCTAGTAGAGT
TGTAACCATATCTCACTGTGGCTTTTATTCCCATTTTCCTGGTGGGAAAT
GAACAAAAAAAAATAGCTTTCCTTTTTTTTAAGTAAATGCATTTCCGATC
ATTTTCATATTATTTTGACCTTCTNAGACTTTAAATAATCTGAAAGAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTTATTTTCTACATAATCTAATATTCAAGTTGTTTACCATAATCA
CTTTGCTTTTGCAGACAGAAGCCTCTAGAGAAGAGCAGTGTGATGTTTTG
AGTGCAAGTACAGAATCCCTTCAAAATCCTTGGCATATGTTTGAACTTCA
GCTTCCTCTTCTAACCACAAATTACAGGTATTCCTCAACGGTTCAAGAAG
TCATAAGACAACATCATGTGTAATGTACCCAGTAGATGCTCTACATAGGG
CTATATACAGCTGAACAAGAAGAACAAGGTTTAGGCTCAGACTCCAAAGC
ACAATAAAAGCATGAAGATGATTCCAGTGAGCTAGAGGCTTCCCTGGCAG
CGTGGGGATGACTGTGCATTGAGATGTGGTAAGTCAGTGGGGCATGTTCT
GATTTATCAATCCTCTGTTTATTATGAGGGAGATGACTAGCTTTTGACTG
CAGCAAACATTTTCATTTTTCTCTGTGAGGAATCTTTGAGGTTTTGAACA
GGATTATAATGTTGTTTAACACAGTCAGACTTAGGTAGATGAATTTGGCT
TTCCCTAATGTCACAGTGAGCTTGGTTAAGATATTAATTTTTCACCTATT
TGTCTCTCTACTTTTGNGGAAAATGGATCAACACATTTTGGGNATTATTT
GGGATTTCTTTCCCTACTCTGATAAACCTAAATTCCACCCCCCCAAACTT
AA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no382_f05.b1 MSMg01no382_f05.b1 CHROMAT_FILE:
MSMg01no382_f05.b1 PHD_FILE: MSMg01no382_f05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:02 2005
         (567 letters)



>mm_chr5_46810130_46811096
          Length = 967

 Score =  594 bits (307), Expect = e-174
 Identities = 325/331 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcccactatttgctagactaattcttattcttttctactgacttagaggactaagg 64
           ||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||
Sbjct: 334 gaattcccactatttgctagactaatttttgttattttctactgacttagaggactaagg 275

                                                                       
Query: 65  cacatagacagtgacaatgaggtttttattattgaagatattgttctctttatttcatat 124
           |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 274 cacatagacagtgacagtgaggtttttattattgaagatattgttctcttcatttcatat 215

                                                                       
Query: 125 cacctccctatttcatagttcccaaatataaaagataagaggcaagacacatctttatca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 cacctccctatttcatagttcccaaatataaaagataagaggcaagacacatctttatca 155

                                                                       
Query: 185 cgtgatctcatttaacatggtgtcttctggttccatccttttcctacaaatgataatagc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 cgtgatctcatttaacatggtgtcttctggttccatccttttcctacaaatgataatagc 95

                                                                       
Query: 245 tcattctttttaaagactgaataatactttcttgtatgcacatagcatattttctttgtc 304
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 94  tcattctttttaaagactgaataatactttgttgtatgcacatagcatattttctttgtc 35

                                          
Query: 305 cattcatctaagactggctcttagggtaagt 335
           |||||||||||||||||||||||||||||||
Sbjct: 34  cattcatctaagactggctcttagggtaagt 4


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space:   533049
Effective search space used:   533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no382_f05.g1 MSMg01no382_f05.g1 CHROMAT_FILE:
MSMg01no382_f05.g1 PHD_FILE: MSMg01no382_f05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:24:02 2005
         (523 letters)



>mm_chr5_46643629_46644551
          Length = 923

 Score =  988 bits (511), Expect = 0.0
 Identities = 520/523 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttattttctacataatctaatattcaagttgtttaccataatcactttgcttttgcagac 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 ttattttctacataatctaatattcaagttgtttaccataatcacgttgcttttgcagac 260

                                                                       
Query: 61  agaagcctctagagaagagcagtgtgatgttttgagtgcaagtacagaatcccttcaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaagcctctagagaagagcagtgtgatgttttgagtgcaagtacagaatcccttcaaaa 320

                                                                       
Query: 121 tccttggcatatgtttgaacttcagcttcctcttctaaccacaaattacaggtattcctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccttggcatatgtttgaacttcagcttcctcttctaaccacaaattacaggtattcctc 380

                                                                       
Query: 181 aacggttcaagaagtcataagacaacatcatgtgtaatgtacccagtagatgctctacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacggttcaagaagtcataagacaacatcatgtgtaatgtacccagtagatgctctacat 440

                                                                       
Query: 241 agggctatatacagctgaacaagaagaacaaggtttaggctcagactccaaagcacaata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agggctatatacagctgaacaagaagaacaaggtttaggctcagactccaaagcacaata 500

                                                                       
Query: 301 aaagcatgaagatgattccagtgagctagaggcttccctggcagcgtggggatgactgtg 360
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaagcatcaagatgattccagtgagctagaggcttccctggcagcgtggggatgactgtg 560

                                                                       
Query: 361 cattgagatgtggtaagtcagtggggcatgttctgatttatcaatcctctgtttattatg 420
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cattgagatgtggtaaatcagtggggcatgttctgatttatcaatcctctgtttattatg 620

                                                                       
Query: 421 agggagatgactagcttttgactgcagcaaacattttcatttttctctgtgaggaatctt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agggagatgactagcttttgactgcagcaaacattttcatttttctctgtgaggaatctt 680

                                                      
Query: 481 tgaggttttgaacaggattataatgttgtttaacacagtcaga 523
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgaggttttgaacaggattataatgttgtttaacacagtcaga 723


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space:   468369
Effective search space used:   468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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