BAC Information

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BAC

Clone NameMSMg01-383C18
Chromosome5 (Build37)
Map Location 83,866,010 - 83,866,335
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039434, Srd5a2l2
Downstream geneLOC100039608, LOC231368, Epha5, LOC100039489
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-383C18.T7 (MSMg01no383_c18.b1)MSMg01-383C18.TJ (MSMg01no383_c18.g1)
ACCAG486903AG486904
length762797
length of high quality
(start - end)		497 (42 - 538)376 (70 - 445)
definitionCHROMAT_FILE: MSMg01no383_c18.b1 PHD_FILE: MSMg01no383_c18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:09 2005CHROMAT_FILE: MSMg01no383_c18.g1 PHD_FILE: MSMg01no383_c18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:25:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTGTGCTCAGTCCAACGTTTGTCTGAGAGCATCCATCTCTGTATTTGCCA
GAGCCTCTCAGGAGACAGCTATATCAGGCTCCTGTCAGCAATCACTTGTT
GGCATCTACAATAGTATCTGGGTTTGGTGACTATATGGGATGGATCCCTA
GGTGGGGCAGTCTCTGGATGGCCTTTCTTTCAGTCTCTGCTCCACACTTT
GTCTCTGTATCTCCTCCCATGGCTATTTTGTTCCTACATCTAAGAAGGAC
AGAAGTATCCACACTTTGGTCTTCCTTCTTCTTGAGCTTCATGTGGCTTG
TAATTTATATCTTGGGTATTCCAAGCTTCTGGGCTAATATCCACTTATCG
ATGTGCATATCATGTGTGTTCTTTTATGATTGGGTTACCTTACTCAGGAT
GATATTTTCTAGTTCCATCAATTTGCCTAAGAATTTCGGATTGTGTATGC
ATTTGTCTGTGTTTGTATATCTCGGGTGTATGTGATTGCCAATTGAAGCC
AGTAGGGTGTGAAACTCTGCAGTCTGAAGGACTCTCACTGTCCCAAAACA
TTCTGAACTCCAATTTTGTTTTCAAAATGGTAGCAATATTTCATAACTAC
TGGAGGATCTTTCCTACTTATGGGTTGGGGTTGGGAACTTTTGAATTTCC
CCACAATCAGCCTAAAATATATCCTTTCCCATTGTTTTCCAAATATATCC
CCCGGGTTGAAA

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGGACAGAAATTCACAGCAGAAAACTGAAGT
CATGACAGCTTGCCATTCCATTTAATGTTGTCTCCAATCAGGGAATTCAA
GGACATGTGGAGAAGTCATAAAGAAATGCAACTCACTACTGGTTTGCTCT
CAAGTGGATACATACATTCCTCTGGGTCTCAGGACCATCTGCCTAGAGGT
GGTGCTACCCACGGTGAGCTAGGATTCCATACACCAAACAATAAGCAAGA
CAATCCTCTACAAACATGACTCCTGGTGAACAACTCAGGTAAGTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCCTCCCCCCTCTCTTAATATTTAA
CAAATATAACTTCTGAAATAAATGTGCTGCTGTGAAATATCTCTTTCTCT
ATCTAAACCCTCCTTTAAATCTTACCAAAACATATGGCTTACACGTAGTT
ACCCTTTCTTCTTTGCTTCTACATTTTGTAAATATTTGTTTGTAATGCTC
CGTTCCCCCCCATTCTTTTATACTTCTTCCCTATAAACGAAACCGCGCCC
TCTTTTTTTTCTTTGAATAATCCCTTCGCTGTTCATTTACTGTCTCTTCT
ACGTCACCCTTCTTACTTTTATCATTTTCTTCGGCATTTTTGTATCTTGT
ATTTTCGCTCCATTACCTTTCACTTCCATTTAGTCTTTTTACATTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no383_c18.g1 MSMg01no383_c18.g1 CHROMAT_FILE:
MSMg01no383_c18.g1 PHD_FILE: MSMg01no383_c18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:09 2005
         (376 letters)



>mm_chr5_83865976_83866751
          Length = 776

 Score =  563 bits (291), Expect = e-165
 Identities = 316/327 (96%), Gaps = 6/327 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggacagaaattcacagcagaaaactgaagtcatgacagcttgccattccatttaatgtt 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 aggacagaatttcacagcagaaaactgaagtcatgacagcttgccattccatttaatgtt 301

                                                                       
Query: 61  gtctccaatcagggaattcaaggacatgtggagaagtcataaagaaatgcaactcactac 120
           |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 300 gtctccaatcagggaactcaaggacatgtggagaagtcataaagaaatacaactcactac 241

                                                                       
Query: 121 tggtttgctctcaagtggatacatacattcctctgggtctcaggaccatctgcctagagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 tggtttgctctcaagtggatacatacattcctctgggtctcaggaccatctgcctagagg 181

                                                                       
Query: 181 tggtgctacccacggtgagctaggattccatacaccaaacaataagcaagacaatcctct 240
           ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 180 tggtgttacccacggtgagctaggagtccatacaccaaacaataagcaagacaatcctct 121

                                                                       
Query: 241 acaaacatgactcctggtgaa-----caactcaggtaagtctctctctctctctctctct 295
           |||||||||||||||||||||     |||||||||||| |||||||||||||||||||||
Sbjct: 120 acaaacatgactcctggtgaagtgagcaactcaggtaa-tctctctctctctctctctct 62

                                      
Query: 296 ctctctctctctctctctctctctctc 322
           |||||||||||||||||||||||||||
Sbjct: 61  ctctctctctctctctctctctctctc 35


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 90
Number of extensions: 40
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 776
Length adjustment: 9
Effective length of query: 367
Effective length of database: 767
Effective search space:   281489
Effective search space used:   281489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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