Query= MSMg01no383_f13.b1 MSMg01no383_f13.b1 CHROMAT_FILE:
MSMg01no383_f13.b1 PHD_FILE: MSMg01no383_f13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:23 2005
(538 letters)
>mm_chr5_101134242_101135179
Length = 938
Score = 876 bits (453), Expect = 0.0
Identities = 505/535 (94%), Gaps = 20/535 (3%)
Strand = Plus / Minus
Query: 4 ggaattcattccgaccctccaggaagatttgggaggattcaagatatcagtggaggaagt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 ggaattcattccgaccctccaggaagatttgggaggattcaagatatcagtggaggaagt 802
Query: 64 aactgcagactgtaactgtgaaatagaaaataaataaataaataaataaataaataaata 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aactgcagactgtaactgtgaaatagaaaataaataaataaataaataaataaataaata 742
Query: 124 aataaataaataaataaataaaaaagatggcctggtttcactttcacaataaaatttgtc 183
||| |||||||||||||||||||||||||||||||||||||
Sbjct: 741 aat--------------------aagatggcctggtttcactttcacaataaaatttgtc 702
Query: 184 acagctgaggagttactgcttagagatgaggaaagacaagatgagatcaattcctagagg 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 gcagctgaggagttactgcttagagatgaggaaagacaagatgagatcaattcctagagg 642
Query: 244 agatgctgtaagtatggagaagcgacagggtcaaacttagactgttacataaacagctga 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 agatgctgtaagtatggagaagcgacagggtcaaacttagactgttacataaacagctga 582
Query: 304 cacaacagcacaggatctgagcgtttggctcattttgtagaagcgttctctctatgtaag 363
|||||||| ||||||||| ||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 581 cacaacagtacaggatctcagcatttggctcattttgtagaagcgttctctctaggtaag 522
Query: 364 aggctgtcaaaccgcatcacgaggtacagagagatcaacagttgataagacaaacttcat 423
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 521 aggctgtcaaactgcatcacaaggtacagagagatcaacagttgataagacaaacttcat 462
Query: 424 tcctgttttaagaaattgcagtaatgtctcaaccttcaataatcctaaccaccatcactt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 461 tcctgttttaagaaattgcagtaatgtctcaaccttcaataatcctaaccaccatcagtt 402
Query: 484 aacagctgcccaaatcaagacccactgcctccagccgaattttacaaggaggtgc 538
|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 401 aacagctgcccaaatcaagacccactgcctccagccaaatgttacaaggaggtgc 347
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space: 489984
Effective search space used: 489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no383_f13.g1 MSMg01no383_f13.g1 CHROMAT_FILE:
MSMg01no383_f13.g1 PHD_FILE: MSMg01no383_f13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:23 2005
(535 letters)
>mm_chr5_100942702_100943636
Length = 935
Score = 944 bits (488), Expect = 0.0
Identities = 524/536 (97%), Gaps = 2/536 (0%)
Strand = Plus / Plus
Query: 1 tctagccgttcttctcggcactgttcagggactgaaccacctcccccctcccccttc-cc 59
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 201 tctagccattcttctcggcactgttcagggactgaaccacctcccccctccccctccacc 260
Query: 60 ccttttgcccagtgacatggccgtgtgcctgctgctcttctggaagtctcttgggagttt 119
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccttt-gcccagtgacatggccgtgtgcctgctgctcttctggaagtctcttgggagttt 319
Query: 120 tccggatgatcagatctgctatcgctgttcttaccttcaggcaatctttattgtgtttac 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tccggatgatcagatctgctatcgctgttcttaccttcaggcaatctttattgtgtttac 379
Query: 180 tcatacatagagtgcaaagggcagccatgctgcccatcctgacacgcccaagaggggttg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tcatacatagagtgcaaagggcagccatgctgcccatcctgacacgcccaagaggggttg 439
Query: 240 attacatgaatagtgaggtcccaagaaggagcaaaaatcaatcccacggagtttgctaag 299
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 440 attacatgaaaagtgaggtcccaagaaggagcaaaaatcaatcccatggagtttactaag 499
Query: 300 ctccatagtaaatcagaaaccttgagagtgttgctgtggttgttcttttataccagtgtg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ctccatagtaaatcagaaaccttgagagtgttgctgtggttgttcttttataccagtgtg 559
Query: 360 tgaatgtgcacttctccgtgcatgcacacacagacagctttcctacatctgtctccaccc 419
||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||| |
Sbjct: 560 tgaatgtgcacttctccatgcgtgcacacacggacagctttcctacatctgtctccacac 619
Query: 420 tattttcacggaactggacacttgctctttcagctagactggttagccagtgagccctca 479
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 620 tattttcacggaactggacacttgctctttcagctagactggttggccagtgagccctca 679
Query: 480 gaacctacttgtcatttatacgggtaccagacacccaaactcctccttctctttac 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gaacctacttgtcatttatacgggtaccagacacccaaactcctccttctctttac 735
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space: 485625
Effective search space used: 485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
