Query= MSMg01no383_m08.b1 MSMg01no383_m08.b1 CHROMAT_FILE:
MSMg01no383_m08.b1 PHD_FILE: MSMg01no383_m08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:54 2005
(497 letters)
>mm_chr5_90492766_90493662
Length = 897
Score = 818 bits (423), Expect = 0.0
Identities = 477/495 (96%), Gaps = 4/495 (0%)
Strand = Plus / Minus
Query: 5 gaattcttgatcctatctggcctcca-ctcccacgtgttggggtcatagggatgcactac 63
||||||||||| ||| |||||| | | ||||||| |||||||||||||||||||||||||
Sbjct: 697 gaattcttgattctaactggcc-ctagctcccacatgttggggtcatagggatgcactac 639
Query: 64 cacattcagattgaatttccttatttttcattttagagcctctcaatgataaacttagtt 123
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 cacattcagattgaattttcttatttttcattttagagcctctcaatgataaacttagtt 579
Query: 124 tttgagttgatagcagactgttttgaaaggcgacaagatataactgagtgtccttccatc 183
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 578 tttgagctgatagcagactgttttgaaaggtgacaagatataactgagtgtccttccatc 519
Query: 184 atatatgctataaatctacatatatgtttcatccacc-actcttctcttattgctcctaa 242
||||| ||||||||||||||||||||||||||||| | | ||||||||||||||||||
Sbjct: 518 gcatatgttataaatctacatatatgtttcatccaccga-ttttctcttattgctcctaa 460
Query: 243 actgtgtgggacagagatgtacctctgagagtgctggagaattctcttctggaattgtgg 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 actgtgtgggacagagatgtacctctgagagtgctggagaattctcttctggaattgtgg 400
Query: 303 acaatggtggatagtcataactcccatcatgtgtaagctttttgcatgaaatcaatgtgt 362
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 399 acaatggtggatagtcataactcccatcatatataagctttttgcatgaaatcaatgtgt 340
Query: 363 acacattattttgggtggaacacagagaatcaaatgttacaagctaacagtctgtatcca 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 acacattattttgggtggaacacagagaatcaaatgttacaagctaacagtctgtatcca 280
Query: 423 gtcagaaatgtctctgcttatagatttggaaaatgctatcattactcccaacacctacca 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 gtcagaaatgtctctgcttatagatttggaaaatgctatcattactcccaacacctacca 220
Query: 483 aaatgtgaggggaag 497
||||| |||||||||
Sbjct: 219 aaatgggaggggaag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space: 431969
Effective search space used: 431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no383_m08.g1 MSMg01no383_m08.g1 CHROMAT_FILE:
MSMg01no383_m08.g1 PHD_FILE: MSMg01no383_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:25:54 2005
(303 letters)
>mm_chr5_90313922_90314624
Length = 703
Score = 547 bits (283), Expect = e-160
Identities = 298/303 (98%)
Strand = Plus / Plus
Query: 1 cattatttggttttgcctgccctgcctagaataactctggtgttttctgtctgttccttt 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 cattatttggttttgcctgccctgcctagaacaactctggtgttttctgtctgttccttt 260
Query: 61 ttccttttctctaagttctgtttggactccctcgatttcccaactcctgagtcattcagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttccttttctctaagttctgtttggactccctcgatttcccaactcctgagtcattcagg 320
Query: 121 accttcactctgacaaacgctgatttaagcacatgccagaagatctttgtttatctgatt 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accttcactctgacaaactctgatttaagcacatgccagaagatctttgtttatctgatt 380
Query: 181 caaaggtgagctctgattaacaagattctcccaacataatccaaggcagggcttcacaaa 240
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 caaaggtgagctctgattaacaagattctcccaacataatccaaggtagggcttcacaaa 440
Query: 241 ctattccctggtttgttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtg 300
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 441 ctattccctggtttgttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcg 500
Query: 301 tgt 303
|||
Sbjct: 501 tgt 503
Score = 80.0 bits (41), Expect = 2e-19
Identities = 44/45 (97%)
Strand = Plus / Plus
Query: 259 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgt 303
|||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 121 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 165
Score = 80.0 bits (41), Expect = 2e-19
Identities = 44/45 (97%)
Strand = Plus / Plus
Query: 259 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgt 303
|||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 123 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 167
Score = 80.0 bits (41), Expect = 2e-19
Identities = 44/45 (97%)
Strand = Plus / Plus
Query: 259 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgt 303
|||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 125 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 169
Score = 80.0 bits (41), Expect = 2e-19
Identities = 44/45 (97%)
Strand = Plus / Plus
Query: 259 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgt 303
|||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 127 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 171
Score = 80.0 bits (41), Expect = 2e-19
Identities = 44/45 (97%)
Strand = Plus / Plus
Query: 259 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgt 303
|||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 129 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 173
Score = 80.0 bits (41), Expect = 2e-19
Identities = 44/45 (97%)
Strand = Plus / Plus
Query: 259 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgt 303
|||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 131 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 175
Score = 78.1 bits (40), Expect = 6e-19
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 260 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgt 303
||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 120 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 163
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 85
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 12
Length of query: 303
Length of database: 703
Length adjustment: 9
Effective length of query: 294
Effective length of database: 694
Effective search space: 204036
Effective search space used: 204036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
