BAC Information

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BAC

Clone NameMSMg01-384B07
Chromosome5 (Build37)
Map Location 88,274,981 - 88,275,437
singlet/doubletsinglet
Overlap gene4930432K09Rik
Upstream geneLOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818, Ugt2b38, Ugt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2, Csn1s2a, Csn1s2b
Downstream geneEG654494, Odam, BC037156, Csn3, BC051076, 2310003L06Rik, 4931407G18Rik, Smr1, EG665603, Smr2, LOC100039941, LOC630942, EG665615, Muc10, Amtn, LOC100039963, EG665631, Ambn, Enam, Igj, Crlz1, Rufy3, Grsf1, Mobkl1a, Dck, Mkrn1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384B07.T7 (MSMg01no384_b07.b1)MSMg01-384B07.TJ (MSMg01no384_b07.g1)
ACCAG487601AG487602
length739742
length of high quality
(start - end)		505 (37 - 541)457 (67 - 523)
definitionCHROMAT_FILE: MSMg01no384_b07.b1 PHD_FILE: MSMg01no384_b07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:17 2005CHROMAT_FILE: MSMg01no384_b07.g1 PHD_FILE: MSMg01no384_b07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTCA
CCTCATCCCCTTTCCCTTTGACTCTGAGAGGGAGCTTGTACCCTACCCCA
GACATCTCCCATTCGTGGGGCATCAAGTCTCTACAGGATAAGGTGGATCC
TCTTCCACTGAGGCCAGACAAGGCAGTCCTCTGCTCCATACATGCTGGGG
GCCTTAGACCAGCATGTGCATGCAATTTGGTTGGTGGCTTTGTCTCTGGG
AGACCCCAGAGGTCCAGGTTAGCTGACATTGTTGGTTTCCCTAAAGGGTC
TCAATCCCGTTCAGCTGTTTCAGTCCTTCCCCTAACTCTTCCATAGGGGT
TTCCGATCTCAGTCCAATGGTTGGCTGTATCTGTGTCTGTCTCAGATGCT
GGTAGATCCTCTCTGAGGTCAGCCATGCTAGGCTCCTGTCTACAAGCACA
ACAAAGCATTAGTAATAGTGTCAGGTTTTGGTGCCTGCCCATGACATGGA
TCTCAAGTTGGGCCAGTCACTGGGTGCCCTTTTCTTCAGTCTCTGTTCCA
TTTTTGTCCCTGCAATTCTTTAAAACAGGAACAATTTTGGGGCAAAAAAT
TTGAAGGTGAGTTGGTGAACTCCCGTGGGCAATGGGGGGCCTGGCTACTA
ACAAAAGGGGCGCTTTAGGGGCATCTCAATAATGGTTGGGATTTTGGGTA
AAGCACCCAAAATGGCCCCAAATCTCCCTCCCCGGGGGG

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCCTTCACTCCTATGATTCAATATCAAGAGTAGC
TAAATCAATAGCTATTTCAACCCAGGTTTTATGATATCTACATATGCATT
CAAATAGACTGAAATGTTGCATTTTAATTAAATTGTTACATGGATGCTTA
TTAATTCCTGTAAGAATATATAACTGTACGAATGCTGCATCTGTATGCAG
ACAGAGGAGAAAACATTATTTGATGAGTACTTTTAGATGACTATTCTATA
TAGTCCTTTATAACGAACTCATGAGTAAAGAAAAACAACTTTGCTTTATA
TCTAAGAAATTTGACAGTTTATTATACAAAATTGACATGTTTTTTTATTG
TTTCACAGGTGCCAATGAACAAACCAAAAGAAATCTAAAGTTTTTCTCTT
TTCTCAACAAATAGTTTATATGTTTTATTAAAACTATTAGTCTATCCATA
TTTGTTGGTTTGTGATGGATTTCTGTAGACATTTCACAAAACAATAATGA
TGAAATGCTTTATTTTCAGTTCAAATGGTAAAATATATACCTTATAGGTA
TAGCTACNAAAATTTAACCAATTTTAGTATGCCCGTTCTTTCAACTAGCT
CTAGGAATACAAAAAATACATTTGGTGGCTTTTGGTCTTTTTAAAAATTT
TAAAAATTTTCTCCCTTAAAATTCCAAAGGGATTCCCCAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_b07.g1 MSMg01no384_b07.g1 CHROMAT_FILE:
MSMg01no384_b07.g1 PHD_FILE: MSMg01no384_b07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:17 2005
         (457 letters)



>mm_chr5_88274781_88275637
          Length = 857

 Score =  853 bits (441), Expect = 0.0
 Identities = 453/457 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccttcactcctatgattcaatatcaagagtagctaaatcaatagctatttcaacccagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccttcactcctatgattcaatatcaagagtagctaaatcaatagctatttcaacccagg 260

                                                                       
Query: 61  ttttatgatatctacatatgcattcaaatagactgaaatgttgcattttaattaaattgt 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttcatgatatctacatatgcattcaaatagactgaaatgttgcattttaattaaattgt 320

                                                                       
Query: 121 tacatggatgcttattaattcctgtaagaatatataactgtacgaatgctgcatctgtat 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 tacatggatgcttattaattcctgtaagaatatataactgtatgaatgctgcatctgtat 380

                                                                       
Query: 181 gcagacagaggagaaaacattatttgatgagtacttttagatgactattctatatagtcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcagacagaggagaaaacattatttgatgagtacttttagatgactattctatatagtcc 440

                                                                       
Query: 241 tttataacgaactcatgagtaaagaaaaacaactttgctttatatctaagaaatttgaca 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttataatgaactcatgagtaaagaaaaacaactttgctttatatctaagaaatttgaca 500

                                                                       
Query: 301 gtttattatacaaaattgacatgtttttttattgtttcacaggtgccaatgaacaaacca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtttattatacaaaattgacatgtttttttattgtttcacaggtgccaatgaacaaacca 560

                                                                       
Query: 361 aaagaaatctaaagtttttctcttttctcaacaaatagtttatatgttttattaaaacta 420
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaagaaatctaaattttttctcttttctcaacaaatagtttatatgttttattaaaacta 620

                                                
Query: 421 ttagtctatccatatttgttggtttgtgatggatttc 457
           |||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttagtctatccatatttgttggtttgtgatggatttc 657


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 857
Length adjustment: 10
Effective length of query: 447
Effective length of database: 847
Effective search space:   378609
Effective search space used:   378609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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