BAC Information

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BAC

Clone NameMSMg01-384C13
Chromosome5 (Build37)
Map Location 92,162,230 - 92,353,849
singlet/doubletdoublet
Overlap geneEG665860, LOC665864, LOC100040506, Ppia-ps5_892.1
Upstream geneCxcl5, Ppbp, Cxcl4, Gm1960, Cxcl15, Cxcl1, Cxcl2, 1110019K23Rik, Epgn, Ereg, Areg, Btc, 9130213B05Rik
Downstream geneRchy1, Thap6, Gm1045, Cdkl2, LOC100040574, G3bp2, Vdp, LOC100040605, U90926, Ppef2, Asahl, Sdad1, Cxcl9, Cxcl10, Cxcl11, LOC100040228, Art3, Nup54, Scarb2, Gm1381, D5Ertd593e, 4932413O14Rik, Shroom3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384C13.T7 (MSMg01no384_c13.b1)MSMg01-384C13.TJ (MSMg01no384_c13.g1)
ACCAG487661AG487662
length751741
length of high quality
(start - end)		556 (36 - 591)373 (63 - 435)
definitionCHROMAT_FILE: MSMg01no384_c13.b1 PHD_FILE: MSMg01no384_c13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:23 2005CHROMAT_FILE: MSMg01no384_c13.g1 PHD_FILE: MSMg01no384_c13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:23 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(92,353,475 - 92,353,849)(92,162,230 - 92,162,602)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTCTG
TATTACTAAAGTGTCCCCAAGATACCTCTAGCTCCTGTGATATAAAGTGT
TTACAATCTCAGTTGCTAAGCTGACAGGGCACAATGTACTGTCTGAACTG
AAGGGCAAATTCATTCATTTGAGGCCTGATGATTGACATATCTCTGCTTT
CCTGATTCCCTGCTTACATGGCCTGCTGTTTCTTATTCCATTGCAAAACT
AAAAGCATACGGTCAACCATTCACCAGCCCCTGACAGCAAATATTATTCT
AAAATCAAACTATGTAATATTTTCTATTCAAATGGAGAACTACTAAAGGA
TGTATCATCACTTTAATTCCTATTTATTGGAAATTCCAGGTGCTACAGAG
ACCATAAAAACAATAAATAGGAGGCTGGAGAGGTAGTTTACTTGCTAAGA
GTGCTTCCTGCTCCACTCGAAAGCCTGAGTTAAATTCTCAGCAGTCATGA
CCGGAGGCTCACAGCCACCCATAATTCTAGCTGCAAGAGATTCTGACACC
TCTGGCTTCTGTGGGCACTGCCACTCAAGCACACAGACCATGTGCATGTG
ATTTAAAGTAAATTAAATCTTAAAATAGCAGTAATTGGCATCAGCGTTGG
GATAGCACGAACATAATAACCTAAAAGTGATGATATGATTTTTTATTTTT
CAAAAATATGAACTTAGTACTCTTAAAACCCCAAAATAATTGATAATGGT
T

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCATATTTCCATGTGATAATGATCTATCCTATTTCTATT
TTATACTCTCATTTTTCTTTATTCTAAATGGTATGAATACTTGCAGACAA
AACCTAAACTCAGAAAAGCAAAGATATATTCACATAGATTTGCTAGGTAT
TAATAACTTGTTCTAGCAAAAGCAATTTTTATTTTAGCATTTAGTATGCA
ATATATGACATTAAATACATATTATCTGATATGTACTTTATTATTATTAG
TTCATTATTATTGTTTTTTGTCTATAATTTCACTTTCCTTTTCAAAAATG
AAGTTCTTTAAACACAGCTGATATTTGTTGTTAGATGCTAATATGCTTTT
TCTTATTACTGTGTTTTGAATTGCTGCTTTGTTTCAGGGGCTTGCTCTTA
ATTAATTCTCAATTCATTGAAAGTTGCTGAGTCAATTTTTCCTTAGCTTT
TAATTTCAATTTGCAACTATTATTGCATGTATAAACACTATCAAATTTCA
CCAATTACATTCAAAATCTCAGACCAAGAATTTCATGACTCTTTTCATTT
GTTAATTTTTGGTTGGGATTTGGATTTATGAAAAGGGTTGTCGTGTAATA
CAATCCAACTCTTATACTGTTACGATACTTAATACGAAAATTTTATATAT
TCTTTAATCCGTTTCCATAGCTCAAATGTTCTTCAGCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_c13.b1 MSMg01no384_c13.b1 CHROMAT_FILE:
MSMg01no384_c13.b1 PHD_FILE: MSMg01no384_c13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:23 2005
         (556 letters)



>mm_chr5_92353265_92354220
          Length = 956

 Score =  671 bits (347), Expect = 0.0
 Identities = 368/375 (98%)
 Strand = Plus / Minus

                                                                       
Query: 181 acatggcctgctgtttcttattccattgcaaaactaaaagcatacggtcaaccattcacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 585 acatggcctgctgtttcttattccattgcaaaactaaaagcatacggccaaccattcacc 526

                                                                       
Query: 241 agcccctgacagcaaatattattctaaaatcaaactatgtaatattttctattcaaatgg 300
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 525 agcccctgacagcaaatattattctaaaatcaaactatggaatattttctattcaaatgg 466

                                                                       
Query: 301 agaactactaaaggatgtatcatcactttaattcctatttattggaaattccaggtgcta 360
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 agaactactaaaagatgtatcatcactttaattcctatttattggaaattccaggtgcta 406

                                                                       
Query: 361 cagagaccataaaaacaataaataggaggctggagaggtagtttacttgctaagagtgct 420
           |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 405 cagagaccataaaaacaataaataggagactggagaagtagtttacttgctaagagtgct 346

                                                                       
Query: 421 tcctgctccactcgaaagcctgagttaaattctcagcagtcatgaccggaggctcacagc 480
           |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tcctgctccacttgaaaacctgagttaaattctcagcagtcatgaccggaggctcacagc 286

                                                                       
Query: 481 cacccataattctagctgcaagagattctgacacctctggcttctgtgggcactgccact 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 cacccataattctagctgcaagagattctgacacctctggcttctgtgggcactgccact 226

                          
Query: 541 caagcacacagacca 555
           |||||||||||||||
Sbjct: 225 caagcacacagacca 211


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space:   516516
Effective search space used:   516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no384_c13.g1 MSMg01no384_c13.g1 CHROMAT_FILE:
MSMg01no384_c13.g1 PHD_FILE: MSMg01no384_c13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:23 2005
         (373 letters)



>mm_chr5_92162030_92162802
          Length = 773

 Score =  683 bits (353), Expect = 0.0
 Identities = 368/373 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   catatttccatgtgataatgatctatcctatttctattttatactctcatttttctttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catatttccatgtgataatgatctatcctatttctattttatactctcatttttctttat 260

                                                                       
Query: 61  tctaaatggtatgaatacttgcagacaaaacctaaactcagaaaagcaaagatatattca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctaaatggtatgaatacttgcagacaaaacctaaactcagaaaagcaaagatatattca 320

                                                                       
Query: 121 catagatttgctaggtattaataacttgttctagcaaaagcaatttttattttagcattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catagatttgctaggtattaataacttgttctagcaaaagcaatttttattttagcattt 380

                                                                       
Query: 181 agtatgcaatatatgacattaaatacatattatctgatatgtactttattattattagtt 240
           ||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||
Sbjct: 381 agtatgcaatatatgccattaaatacatattatctgatatgtagtttattattagtagtt 440

                                                                       
Query: 241 cattattattgttttttgtctataatttcactttccttttcaaaaatgaagttctttaaa 300
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 cattattattgttttttgtctataattttactttccttttcaaaaatgaagttctttaaa 500

                                                                       
Query: 301 cacagctgatatttgttgttagatgctaatatgctttttcttattactgtgttttgaatt 360
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 501 cacagctgatatttgttgttagatgctaatatgttttttcttattactgtgttttgaatt 560

                        
Query: 361 gctgctttgtttc 373
           |||||||||||||
Sbjct: 561 gctgctttgtttc 573


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space:   278096
Effective search space used:   278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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