BAC Information

Click to search

BAC

Clone NameMSMg01-384E08
Chromosome5 (Build37)
Map Location 41,247,167 - 41,408,616
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040502
Downstream geneLOC208522, Rab28, Bapx1, A230054D04Rik, LOC384308
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384E08.T7 (MSMg01no384_e08.b1)MSMg01-384E08.TJ (MSMg01no384_e08.g1)
ACCAG487747AG487748
length754748
length of high quality
(start - end)		497 (37 - 533)520 (66 - 585)
definitionCHROMAT_FILE: MSMg01no384_e08.b1 PHD_FILE: MSMg01no384_e08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:32 2005CHROMAT_FILE: MSMg01no384_e08.g1 PHD_FILE: MSMg01no384_e08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:26:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,408,124 - 41,408,616)(41,247,167 - 41,247,686)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACCA
AGATTATCAGAAACAGAGAATTTGGTCCATTTCCAATAGTCACTCATATT
CTTCCTTTTCAGCACTTAACTTAGTTAGACTTGATACAAGAAGACCAGAT
ATGGAGAAATTAGCATTCTGAACATATAATTTTCCCCATAAAACACAACA
AGAGATAAAAATAAAGGAAGTCTAGACCCTTTCTGCCATTACAATATTAT
ATACATTCTCAGAGTATAATTTGTTGCACTTGCACTTATTGCTACCTGTT
TCTTTGACTCTACTGCAATTAACCTGAAGATATCATTGTGTGTATATGCA
CAATCCACTGCAAGTTCAGGGGCACGATAGTGATTTGTAACTGTCAACAG
GGTTATAAGGTCTAGCAAAGTCCAGCTAATGAAAGCTTGTACAACCACTC
TGGAAATCAGTCTGGCAGTTCCTCAGAAAATTGGACATAGTACTACCGGA
GGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACTG
GTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATA
GCCAGAAGCTGGAAAGAACCCAGATGCCCTNCACCGAGGATTGGTACCGA
AAATGGGGACATTTACACCTGGAGGACTACTCCCCTATTAAAAGAAGGAT
TTTTGAAATTCCTACCCAACGGATGGACCCGGAGGGGGTCCTCTTGGATG
AGGA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCCCTTTTGTTAGTCATTCTAAAACATTTTACTTAG
TTGGCTAAAAATAAGAAGATTCTTAAGAATTGTTGTAGTGATTTGTTTAT
TTTGCTTTTTATTTTTTATTAGGTGATAAGTAAGTTGATTGTTTCATTTC
ATAAAATTTTGCTGGGTACATGCAATTACTGAAGATTTTGGGCTCTGAGG
AAGTGCACAGGAGCTGTAGAGGAGTTGGCCCAAAGAACAAGGTGCCCTTG
ATCAAGAAGGCAGGCTCTTTAATGCACATCTAAGCCTTATCCCAGACAGA
AAATCTCTATGGCTTTTCATAAGACTGAGACTAGGAGAACATTATTTTTC
TGGGAAGATAGGATCATTTCTTAGGCTACAATCAATATCACTGTCCTACA
TCTGGAGATTTGTACTTCATGCCTTTTACCTGAATTTTAAATTATTCATT
GTTCCCCTCTTCTCATAACTACCTTAGAATCTTCATTTTATCCATTGGAT
AAGAAATCCTACTGGAGGTTGGAGAGATGACTCAATGGTAAGAGCACTGA
CTATTCTTCCAGAGGTCCTGAGTTGAATTCTCAGCAACCACATGGTGGCT
TACAACCCTCTGTATTGGAATCCAATGCCCTCTTTTTGGGGAGTCCGAAG
ACAGCTACCCTGTGTTCCTTATTTTAAAAAAAAAAATTTTTTTCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_e08.b1 MSMg01no384_e08.b1 CHROMAT_FILE:
MSMg01no384_e08.b1 PHD_FILE: MSMg01no384_e08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:32 2005
         (497 letters)



>mm_chr5_41408026_41408922
          Length = 897

 Score =  946 bits (489), Expect = 0.0
 Identities = 492/493 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaccaagattatcagaaacagagaatttggtccatttccaatagtcactcatatt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 gaattcaccaagattatcagaaacagagaatttggtccatttccaatagtcactcatatt 532

                                                                       
Query: 65  cttccttttcagcacttaacttagttagacttgatacaagaagaccagatatggagaaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 cttccttttcagcacttaacttagttagacttgatacaagaagaccagatatggagaaat 472

                                                                       
Query: 125 tagcattctgaacatataattttccccataaaacacaacaagagataaaaataaaggaag 184
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 471 tagcattctgaacatataattttccccataaaacacgacaagagataaaaataaaggaag 412

                                                                       
Query: 185 tctagaccctttctgccattacaatattatatacattctcagagtataatttgttgcact 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 tctagaccctttctgccattacaatattatatacattctcagagtataatttgttgcact 352

                                                                       
Query: 245 tgcacttattgctacctgtttctttgactctactgcaattaacctgaagatatcattgtg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 tgcacttattgctacctgtttctttgactctactgcaattaacctgaagatatcattgtg 292

                                                                       
Query: 305 tgtatatgcacaatccactgcaagttcaggggcacgatagtgatttgtaactgtcaacag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 tgtatatgcacaatccactgcaagttcaggggcacgatagtgatttgtaactgtcaacag 232

                                                                       
Query: 365 ggttataaggtctagcaaagtccagctaatgaaagcttgtacaaccactctggaaatcag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 ggttataaggtctagcaaagtccagctaatgaaagcttgtacaaccactctggaaatcag 172

                                                                       
Query: 425 tctggcagttcctcagaaaattggacatagtactaccggaggatccagcaatacctctcc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 tctggcagttcctcagaaaattggacatagtactaccggaggatccagcaatacctctcc 112

                        
Query: 485 tgggcatatatcc 497
           |||||||||||||
Sbjct: 111 tgggcatatatcc 99


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space:   431969
Effective search space used:   431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no384_e08.g1 MSMg01no384_e08.g1 CHROMAT_FILE:
MSMg01no384_e08.g1 PHD_FILE: MSMg01no384_e08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:26:32 2005
         (520 letters)



>mm_chr5_41246967_41247886
          Length = 920

 Score =  998 bits (516), Expect = 0.0
 Identities = 519/520 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cccttttgttagtcattctaaaacattttacttagttggctaaaaataagaagattctta 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 cccttttgttagtcattctaaaacattttacctagttggctaaaaataagaagattctta 260

                                                                       
Query: 61  agaattgttgtagtgatttgtttattttgctttttattttttattaggtgataagtaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaattgttgtagtgatttgtttattttgctttttattttttattaggtgataagtaagt 320

                                                                       
Query: 121 tgattgtttcatttcataaaattttgctgggtacatgcaattactgaagattttgggctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgattgtttcatttcataaaattttgctgggtacatgcaattactgaagattttgggctc 380

                                                                       
Query: 181 tgaggaagtgcacaggagctgtagaggagttggcccaaagaacaaggtgcccttgatcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaggaagtgcacaggagctgtagaggagttggcccaaagaacaaggtgcccttgatcaa 440

                                                                       
Query: 241 gaaggcaggctctttaatgcacatctaagccttatcccagacagaaaatctctatggctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaggcaggctctttaatgcacatctaagccttatcccagacagaaaatctctatggctt 500

                                                                       
Query: 301 ttcataagactgagactaggagaacattatttttctgggaagataggatcatttcttagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcataagactgagactaggagaacattatttttctgggaagataggatcatttcttagg 560

                                                                       
Query: 361 ctacaatcaatatcactgtcctacatctggagatttgtacttcatgccttttacctgaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctacaatcaatatcactgtcctacatctggagatttgtacttcatgccttttacctgaat 620

                                                                       
Query: 421 tttaaattattcattgttcccctcttctcataactaccttagaatcttcattttatccat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttaaattattcattgttcccctcttctcataactaccttagaatcttcattttatccat 680

                                                   
Query: 481 tggataagaaatcctactggaggttggagagatgactcaa 520
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tggataagaaatcctactggaggttggagagatgactcaa 720


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space:   464100
Effective search space used:   464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |