BAC Information

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BAC

Clone NameMSMg01-384O01
Chromosome5 (Build37)
Map Location 135,111,343 - 135,111,948
singlet/doubletsinglet
Overlap geneEif4h
Upstream geneLOC666038, LOC100039750, Gats, Wbscr16, Gtf2ird2, Ncf1, Gtf2i, LOC630424, Gtf2ird1, LOC100039820, Clip2, EG666071, Gm52, Rfc2, Lat2
Downstream geneLOC638081, Limk1, Eln, Wbscr28, Cldn13, Wbscr27, Cldn4, Cldn3, Abhd11, Stx1a, Wbscr22, Wbscr18, Vps37d, Mlxipl, Tbl2, Bcl7b, LOC100040069, Baz1b, Fzd9, Fkbp6, Trim50, Nsun5, Pom121, Hip1, Ccl26l, Ccl24, Rhbdd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-384O01.T7 (MSMg01no384_o01.b1)MSMg01-384O01.TJ (MSMg01no384_o01.g1)
ACCAG488210AG488211
length788734
length of high quality
(start - end)		474 (36 - 509)608 (66 - 673)
definitionCHROMAT_FILE: MSMg01no384_o01.b1 PHD_FILE: MSMg01no384_o01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:16 2005CHROMAT_FILE: MSMg01no384_o01.g1 PHD_FILE: MSMg01no384_o01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:27:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGT
TCACTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGAAGTCC
ACCTTCTTGAGTTCTTTATATATGTTAGATATTAGTCCCCTATCTGATTT
AGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTAGTCTTAT
TGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCAT
TTGTCAATTCTCAATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGGAA
TTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTCCTCTA
TAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTAGAT
TTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATTCTTCTACA
CGATAACAAGTAACACCTGTTCCTGTGTTGTTTTGAGCAGAGTTATCCTG
GTTGACAGAGACCCTTTTTTTTTTTTTCCTTTATTCCTCTATGACTTGCA
CATCCTTCGATGTCTTCCTTCATCCTTCGCGTCCCTTCCGTTGCCTTGTT
TTCCTGCTCACTTCCCTTTCTTCCTTCTTCTTCCCTCTTTTCTTTCTTCT
TCTTCCACTCTCCTTTCTTGACCCTCCTTTTCTTTTCTTCTTCATTTCGC
CTTCCTCTTCCCCTCCTCCTTTCTTCCTTCAACTTTTCTTCCCTCTTTCC
TTCTTACCTTCTCCTTCCGCCTTTCTTCCTTCTTCTCT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXGTCTTGATTTGCTTGAGAGCAATGCTTGCTCCCCG
CTGAGAATGGATCTGCACATGGGTAGGCTTGAGGAGAAAGCCATGCTTTC
AGCCCTCACTTCCTGACAACTGCAGGACCATAACACATCTACAAAACAGG
CTTGGGTCCCTCCAAAGAGGTGCACCAGAGACTGCAATCCTGAGGCCTTA
ATGAAAGCTTTTGGACAATGTGTAACTCTGAAAGTCAGGCCACAGCTATC
ACCCTCATGTCCTGGACCAGGGGAAAGTACCTCACACAAATGATTAAGTA
CAAGATGATCTTCCCAATATATGCTGAGGCACCTATAAGGTTAAAGTACT
GCAGAGCATAAAGATAACTGCTGATATGAACATCACCAATACAGCAATTA
AAAGATCAATCACCAAAGATATCTAGTCACCTCTTCTACCATACTGTAAA
TTTTCAGCTTCAGAGAGGGGAGAACAGGACTTGGTTCAGTACTCAGCTGA
GCTGGAGGGGAAGAAATGAGACTACAAAACAAAAAAATCTACCCAAAACA
AGTCAGCGGAGGCAGATCTGTTCTTCTGTAAGACATAAAATAAAGACTTA
GTGACGACAATCTTGGAATTTTTCACTTGGAATCCTCCTGCCTCAGGCTT
CAGAGAAACCCTGTCTCAAAACAACCACAACAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no384_o01.g1 MSMg01no384_o01.g1 CHROMAT_FILE:
MSMg01no384_o01.g1 PHD_FILE: MSMg01no384_o01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:27:17 2005
         (608 letters)



>mm_chr5_135111143_135112148
          Length = 1006

 Score = 1118 bits (578), Expect = 0.0
 Identities = 600/608 (98%), Gaps = 2/608 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtcttgatttgcttgagagcaatgcttgctccccgctgagaatggatctgcacatgggta 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 gtcttgatttgcttgagagcaatgcttgctccccgctgaggatggatctgcacatgggta 260

                                                                       
Query: 61  ggcttgaggagaaagccatgctttcagccctcacttcctgacaactgcaggaccataaca 120
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcttgagga--aagccatgctttcagccctcacttcctgacaactgcaggaccataaca 318

                                                                       
Query: 121 catctacaaaacaggcttgggtccctccaaagaggtgcaccagagactgcaatcctgagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 catctacaaaacaggcttgggtccctccaaagaggtgcaccagagactgcaatcctgagg 378

                                                                       
Query: 181 ccttaatgaaagcttttggacaatgtgtaactctgaaagtcaggccacagctatcaccct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 379 ccttaatgaaagcttttggacaatgtgtaactctgaaagtcaggccacagctatcgccct 438

                                                                       
Query: 241 catgtcctggaccaggggaaagtacctcacacaaatgattaagtacaagatgatcttccc 300
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 439 catgtcctggaccaggggaaagtgcctcacacaaatgattaagtacaagatgatcttccc 498

                                                                       
Query: 301 aatatatgctgaggcacctataaggttaaagtactgcagagcataaagataactgctgat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 aatatatgctgaggcacctataaggttaaagtactgcagagcataaagataactgctgat 558

                                                                       
Query: 361 atgaacatcaccaatacagcaattaaaagatcaatcaccaaagatatctagtcacctctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 atgaacatcaccaatacagcaattaaaagatcaatcaccaaagatatctagtcacctctt 618

                                                                       
Query: 421 ctaccatactgtaaattttcagcttcagagaggggagaacaggacttggttcagtactca 480
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 619 ctaccatactgtaaattttcagcttcagagaggggagaacaagacttggttcagtactca 678

                                                                       
Query: 481 gctgagctggaggggaagaaatgagactacaaaacaaaaaaatctacccaaaacaagtca 540
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 679 gctgagctggaggggaagaaatgagactacaaaacaaaaaaatccacccaaaacaagtca 738

                                                                       
Query: 541 gcggaggcagatctgttcttctgtaagacataaaataaagacttagtgacgacaatcttg 600
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 739 gcggaggcagatctgttcttctgtaaaacataaaataaagacttagtgacgacaatcttg 798

                   
Query: 601 gaattttt 608
           ||||||||
Sbjct: 799 gaattttt 806


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1006
Length adjustment: 10
Effective length of query: 598
Effective length of database: 996
Effective search space:   595608
Effective search space used:   595608
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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