BAC Information

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BAC

Clone NameMSMg01-385I02
Chromosome5 (Build37)
Map Location 70,225,040 - 70,225,521
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666996, Kctd8, LOC545756, Yipf7, Guf1, Gnpda2
Downstream geneGabrg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-385I02.T7 (MSMg01no385_i02.b1)MSMg01-385I02.TJ (MSMg01no385_i02.g1)
ACCAG488690AG488691
length750762
length of high quality
(start - end)
495 (31 - 525)482 (61 - 542)
definitionCHROMAT_FILE: MSMg01no385_i02.b1 PHD_FILE: MSMg01no385_i02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:05 2005CHROMAT_FILE: MSMg01no385_i02.g1 PHD_FILE: MSMg01no385_i02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGTAGACGACTCACTATAGTTCAGAGGATCCGCGGAATTCTTAGGCAAA
TGACCAAAAAAGAACACAGATGATATGCACTCACTGATAAGCAGATATTA
GCCCAAAAACGTAAAATACCCAAGACACAATTTGCAAAACACAATCAACT
CAAGAAGAAGACCAAAGTGTGGATACTTCATTCCTTCTTAGAATGGGAAA
CAAAATATCCATGGAAGGAGTTACAGAGACAAAGGTCAGAGCTGAGATGG
AAGGAAGGACCATCCAGAGACTGCCACACCCAGGGATCCATCCCATAAAC
AACCATCAAACCCAGACACTATTGCATATGCCAGCAAGATTTTGCTGACA
GGACCCTGATATATCTATCTCTTGTGAGGCTATGCCAGTGCCTGGCAAAT
ACAGAAGTGGATGCTCACAGTCAACTATTGGATGGAACACAGGGCCCACA
ATGAAGGAGCTAGAGAAAGTACCTAAGGAGCTAAAGGTGTCTGCAACCCT
ATAGGAGGAACAACAATATGAACTAACCTGTACCACCACCACCACCCCGC
CCCTCAGAGCTTGTGTCTCTAGTTGCATATGTAGCAGAGGATGGCATAGT
TGCTCATCCACTGGAGGAGAGGTCCTTGGTCTTTGCAAGATTATATGCCC
CAGTACAGGGGAATGCCAGGGTCCAAAACAGGAATTCATAGGTTGCGCAC
TAGTGCGTGAGATGGCTGTTTATAACCCCCAACTTTTCCTTTACCTCTTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCATAGACTCACTCTCAAGTGTTTTGCACAGAAACTTTATG
CTCTGAGTGTATATGGCTCTAAAAGTGAATATTTCACTGGTCTCACTGAA
ATATCCCCACCATGGTTACTTAGTTGACTATTAGGAAAGTGCAATGTTCC
ATTTAAAAAAATAATAATTTAATACTGTTCTGTATGCAGCAGCAAATATC
ACAAACTAACAAGCAAGCTCTCTTCTCTTCATTTCCAGTGCTCTATAGCA
GTATATTAGACAGTTATATGGAGATTGAGCTTAATACTAGCCCATCCTTG
TAGGCCACTGGCGACATACTGCTTTCTGTCAAGAGAATTTTCTTGTTTTC
TCAAGCAAACCATTTCTTGAAAGATGGCTAAAAAGAAGCTATTGTGATAA
CTTGGCTGAATTTCAGGAAATTTCAGACTTGTCCAGATGGTGAGATACTG
TGGTGGGGTGAAGCAGGTGAAGGCTACATTTAAAATGCTCTGGCAATCTT
CCTGAGCCTCGGTAACAGCTTCTTTAGATTCTTTCCTACCAAATTGTTTC
TCCCCAAAATCTCAAACTATGGCCTTGTGCTTGGTTTGCATATGAATCCT
TTCCTCCCCTAAAGGCTAAAAAGATTGGTTATTTTTTTCCCTATTTGTTT
AAACCTTTGATTTTCTATTTTCCTCTTTGGTTTTAATTTAGGTTACTTTC
TTTTGTCTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no385_i02.g1 MSMg01no385_i02.g1 CHROMAT_FILE:
MSMg01no385_i02.g1 PHD_FILE: MSMg01no385_i02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:05 2005
         (482 letters)



>mm_chr5_70224840_70225721
          Length = 882

 Score =  893 bits (462), Expect = 0.0
 Identities = 477/482 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   catagactcactctcaagtgttttgcacagaaactttatgctctgagtgtatatggctct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catagactcactctcaagtgttttgcacagaaactttatgctctgagtgtatatggctct 260

                                                                       
Query: 61  aaaagtgaatatttcactggtctcactgaaatatccccaccatggttacttagttgacta 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 aaaagtgaatatttcactggtctcactgaaatatccccaccatggttacttatttgacta 320

                                                                       
Query: 121 ttaggaaagtgcaatgttccatttaaaaaaataataatttaatactgttctgtatgcagc 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 ttaggaaagtgcaatgttccatttaaaataataataatttaatactgttctgtatgcagc 380

                                                                       
Query: 181 agcaaatatcacaaactaacaagcaagctctcttctcttcatttccagtgctctatagca 240
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcaattatcacaaactaacaagcaagctctcttctcttcatttccagtgctctatagca 440

                                                                       
Query: 241 gtatattagacagttatatggagattgagcttaatactagcccatccttgtaggccactg 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtatgttagacagttatatggagattgagcttaatactagcccatccttgtaggccactg 500

                                                                       
Query: 301 gcgacatactgctttctgtcaagagaattttcttgttttctcaagcaaaccatttcttga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcgacatactgctttctgtcaagagaattttcttgttttctcaagcaaaccatttcttga 560

                                                                       
Query: 361 aagatggctaaaaagaagctattgtgataacttggctgaatttcaggaaatttcagactt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagatggctaaaaagaagctattgtgataacttggctgaatttcaggaaatttcagactt 620

                                                                       
Query: 421 gtccagatggtgagatactgtggtggggtgaagcaggtgaaggctacatttaaaatgctc 480
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtccagatggtgaaatactgtggtggggtgaagcaggtgaaggctacatttaaaatgctc 680

             
Query: 481 tg 482
           ||
Sbjct: 681 tg 682


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space:   411584
Effective search space used:   411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)