Query= MSMg01no385_j15.b1 MSMg01no385_j15.b1 CHROMAT_FILE:
MSMg01no385_j15.b1 PHD_FILE: MSMg01no385_j15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:13 2005
(123 letters)
>mm_chr5_55244426_55244950
Length = 525
Score = 192 bits (99), Expect = 9e-54
Identities = 114/119 (95%), Gaps = 2/119 (1%)
Strand = Plus / Plus
Query: 5 ggaat-catgttttccggaa-cacgatatccttcatatgtctacttagctttgatgtagc 62
||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattcatgttttcaggaaacacgatatccttcatatgtctacttagctttgatgtagc 264
Query: 63 ctcatgggtaaaatttgtaaggagaaatgatgtctagtattctccttcaaaatgtattt 121
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 265 ctcatgggtaaaatttgtaaggagaaatgatttctagtattctcctccaaaatgtattt 323
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 123
Length of database: 525
Length adjustment: 8
Effective length of query: 115
Effective length of database: 517
Effective search space: 59455
Effective search space used: 59455
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no385_j15.g1 MSMg01no385_j15.g1 CHROMAT_FILE:
MSMg01no385_j15.g1 PHD_FILE: MSMg01no385_j15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:13 2005
(530 letters)
>mm_chr5_55426183_55427112
Length = 930
Score = 1017 bits (526), Expect = 0.0
Identities = 529/530 (99%)
Strand = Plus / Minus
Query: 1 cttatagcattagtttctgtcttatccagtaaaaattttaggctttcataatatttatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 cttatagcattagtttctgtcttatccagtaaaaattttaggctttcataatatttatta 671
Query: 61 aaaatctatgatttaccaaaacctggggcaacaactacaaagactaagggatattattgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 aaaatctatgatttaccaaaacctggggcaacaactacaaagactaagggatattattgc 611
Query: 121 ttttgatggcatgagcagaagtgacagagaggcaaatattagttcaataaattttagtat 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 610 ttttgatggcatgagcagaagtgacagagaggcaaatattagttcaataaattttactat 551
Query: 181 atactgtgatatgttatgaaacagaataaatagtatcgtgaaaacaatcaaaagagttaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 atactgtgatatgttatgaaacagaataaatagtatcgtgaaaacaatcaaaagagttaa 491
Query: 241 acaaaacaacagagactgagggtacgtgactgagaacataataactgagaataaatccta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 acaaaacaacagagactgagggtacgtgactgagaacataataactgagaataaatccta 431
Query: 301 aatatataaagcttaataagataagctacatttatataaaatgataaagagagaaatatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 aatatataaagcttaataagataagctacatttatataaaatgataaagagagaaatatt 371
Query: 361 ctcattctaaaccttaacgtgagagcattttttgggaagggcaggacagctttctagtga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ctcattctaaaccttaacgtgagagcattttttgggaagggcaggacagctttctagtga 311
Query: 421 atgatgggaaaccagcattgcataaagcaaaagacgggaatacttcatgcaggcttaaca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 atgatgggaaaccagcattgcataaagcaaaagacgggaatacttcatgcaggcttaaca 251
Query: 481 ggtaacagtgaggattattgattatattctgaagataaaagaaaaagaat 530
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ggtaacagtgaggattattgattatattctgaagataaaagaaaaagaat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space: 478400
Effective search space used: 478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
