BAC Information

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BAC

Clone NameMSMg01-385K04
Chromosome5 (Build37)
Map Location 42,669,886 - 42,842,082
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC208522, Rab28, Bapx1, A230054D04Rik, LOC384308, LOC100040588
Downstream geneEG636612, LOC433883, EG665934, Cpeb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-385K04.T7 (MSMg01no385_k04.b1)MSMg01-385K04.TJ (MSMg01no385_k04.g1)
ACCAG488790AG488791
length790760
length of high quality
(start - end)		379 (47 - 425)483 (55 - 537)
definitionCHROMAT_FILE: MSMg01no385_k04.b1 PHD_FILE: MSMg01no385_k04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:15 2005CHROMAT_FILE: MSMg01no385_k04.g1 PHD_FILE: MSMg01no385_k04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,669,886 - 42,670,264)(42,841,600 - 42,842,082)
sequence
TAATACACTCACTATTTCCAGAGGATCCGCGGGATTCACAGGAACCTTCC
TCTGGATCAGATATTCTCACCTAGAAAATCCCACCACAAGGGGATATTTT
GTTTTTCTATACTCTTCAGATTTTCATTTCAAAAGGCTCCGTCTGTCAGA
CAAGGGTATCTGGGTTGGTTAAAGCAAATCACAGTCCCTTTACATATTAG
CCCTTCCATCACATGGTGTGGAATTGAGAGGCCAGGGAAGCTCAGATTCT
CTAGATGTTTTCAGCATTAGATTCCCATCTGAATTCCCTGATCGGGTTTC
TAATGAAGAAGCTTGTTAATTCTGAAGCTTAGTGACGAGGGTGGAATAAA
GATGGTGGCAGTTTTCCCTGTGGAATTGAATATTTTATGCCAATGCTATT
TTATTGTAAGAGATTTTAAATACACAAAAGGAGTTGGTGTGTGTGTGTGT
GATTGTGTGAGTTATCGCCTCTTCCTCTTTATTTCTAATTTTTCCTTATT
TTCTCCTCTTGTTTCTCCTCTTAATCCCCCCTACTTTTCTTTTTTTCCCA
TTAATCTTCCCCACTACCTCCACCATACCTATTTCATTCTCTCTATTTTT
TTCACTTATTTTTTCACACTCATACTCATTTATATTTTTTTTTTCTATTT
CTCTCACACCCTTTCTTTTTTTCCTTTCCCCCTTTTTACTTCTCCTTTCC
TCCTCTTTTATTTTCCCTCTTTTCCTCTGATTTTCTTATCGACCTTTTCT
TTTTTTTTTTCTCCCCTTATCCACCTCAATCTCTCCTTTC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCACAGCATCATGCACTTGCAGAAACTATCTACAGCTGGAAAAAACT
CATGCCCTGACCTGGGCATGAGGCAAATCATAATCTGTCCCTGTGGACCA
TCTGAAGCAGCCTGGTAACCCACAGCCGGGATTAAAGCAAAAACATATTC
TTATAACATTTTGTGTTTAAAGAGACCAAGATTCTCACTACATAGTCTAT
CAATGTTTCATGTATTCAGTTGAAATGGACTGATTTAAAAGCCAAGGATA
TATTTAACCCATTATCTATAACGGCAACAGCCAATCAAATGGAACAATGC
AATGTTTAAGAATTAATTCTTGAAGCATTAAAGCAACAAAGAAACGTGGT
TAAAAGTGACTACAGAACACAGAACACAGGAACTATTGCTGCAAGGAAAT
CTGCTCCATTAGTTGGGACTCAGGAGTCCAAGTATCGTGCTCCTCTAATG
ACAGCACTGAGCAACCTGGTGTTATCATTCTAATTTTTTGAAACCTGAGC
AAACGGAAGAACTAGAAAAATTGAGTGACGCGCTGAAGGTCACATGGACG
CCAAGCCTAGAATAGAACTAATGTCTCTTGGTTTCCCGTTCAGTTGTGGA
CTTTCCTATACACCTTTATTAAAGCTATCTTGGTGTCCCTACCACATGTC
TTTGCGATATCTTGATTTATTATTACCTCCTTTCCGTATATATACTCTTT
GTCTTAATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no385_k04.b1 MSMg01no385_k04.b1 CHROMAT_FILE:
MSMg01no385_k04.b1 PHD_FILE: MSMg01no385_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:15 2005
         (379 letters)



>mm_chr5_42669686_42670464
          Length = 779

 Score =  733 bits (379), Expect = 0.0
 Identities = 379/379 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcctctggatcagatattctcacctagaaaatcccaccacaaggggatattttgttttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcctctggatcagatattctcacctagaaaatcccaccacaaggggatattttgttttt 260

                                                                       
Query: 61  ctatactcttcagattttcatttcaaaaggctccgtctgtcagacaagggtatctgggtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctatactcttcagattttcatttcaaaaggctccgtctgtcagacaagggtatctgggtt 320

                                                                       
Query: 121 ggttaaagcaaatcacagtccctttacatattagcccttccatcacatggtgtggaattg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggttaaagcaaatcacagtccctttacatattagcccttccatcacatggtgtggaattg 380

                                                                       
Query: 181 agaggccagggaagctcagattctctagatgttttcagcattagattcccatctgaattc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaggccagggaagctcagattctctagatgttttcagcattagattcccatctgaattc 440

                                                                       
Query: 241 cctgatcgggtttctaatgaagaagcttgttaattctgaagcttagtgacgagggtggaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctgatcgggtttctaatgaagaagcttgttaattctgaagcttagtgacgagggtggaa 500

                                                                       
Query: 301 taaagatggtggcagttttccctgtggaattgaatattttatgccaatgctattttattg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaagatggtggcagttttccctgtggaattgaatattttatgccaatgctattttattg 560

                              
Query: 361 taagagattttaaatacac 379
           |||||||||||||||||||
Sbjct: 561 taagagattttaaatacac 579


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space:   284900
Effective search space used:   284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no385_k04.g1 MSMg01no385_k04.g1 CHROMAT_FILE:
MSMg01no385_k04.g1 PHD_FILE: MSMg01no385_k04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:16 2005
         (483 letters)



>mm_chr5_42841212_42842094
          Length = 883

 Score =  911 bits (471), Expect = 0.0
 Identities = 480/483 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacagcatcatgcacttgcagaaactatctacagctggaaaaaactcatgccctgacctg 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 871 cacagcatcatgcacttgcagaaactatctacagctggaaaaaaatcatgccctgacctg 812

                                                                       
Query: 61  ggcatgaggcaaatcataatctgtccctgtggaccatctgaagcagcctggtaacccaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 ggcatgaggcaaatcataatctgtccctgtggaccatctgaagcagcctggtaacccaca 752

                                                                       
Query: 121 gccgggattaaagcaaaaacatattcttataacattttgtgtttaaagagaccaagattc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 gccgggattaaagcaaaaacatattcttataacattttgtgtttaaagagaccaagattc 692

                                                                       
Query: 181 tcactacatagtctatcaatgtttcatgtattcagttgaaatggactgatttaaaagcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 tcactacatagtctatcaatgtttcatgtattcagttgaaatggactgatttaaaagcca 632

                                                                       
Query: 241 aggatatatttaacccattatctataacggcaacagccaatcaaatggaacaatgcaatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 aggatatatttaacccattatctataacggcaacagccaatcaaatggaacaatgcaatg 572

                                                                       
Query: 301 tttaagaattaattcttgaagcattaaagcaacaaagaaacgtggttaaaagtgactaca 360
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 571 tttaagaattaattcttgaagcattaaagcaacgaagaaacgtggttaaaagtgactaca 512

                                                                       
Query: 361 gaacacagaacacaggaactattgctgcaaggaaatctgctccattagttgggactcagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 gaacacagaacacaggaactattgctgcaaggaaatctgctccattagttgggactcagg 452

                                                                       
Query: 421 agtccaagtatcgtgctcctctaatgacagcactgagcaacctggtgttatcattctaat 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 451 agtccaagtatcgtgctcctctaatgacagcactgagcaacctggtgttatcattccaat 392

              
Query: 481 ttt 483
           |||
Sbjct: 391 ttt 389


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space:   412929
Effective search space used:   412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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