BAC Information

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BAC

Clone NameMSMg01-385L09
Chromosome5 (Build37)
Map Location 142,995,153 - 143,198,778
singlet/doubletdoublet
Overlap geneD930005D10Rik, Papolb, Mmd2, Wipi2, Slc29a4
Upstream geneSdk1, LOC666727, Foxk1, C330006K01Rik
Downstream geneTnrc18, LOC100038954, LOC100041004, LOC100038972, LOC100038984, LOC100042525, LOC100038888, Zfp469, LOC666788, Fbxl18, D430018E03Rik, LOC100042558, Actb, Fscn1, 2810055G22Rik, LOC667809, Olfr718-ps1, LOC640324, LOC100042605, Rbak, 4933411G11Rik, Spdyb, Zfp12, Zfp316, Gm792, E130309D02Rik, Zdhhc4, Grid2ip, Kdelr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-385L09.T7 (MSMg01no385_l09.b1)MSMg01-385L09.TJ (MSMg01no385_l09.g1)
ACCAG488847AG488848
length750766
length of high quality
(start - end)		508 (47 - 554)457 (59 - 515)
definitionCHROMAT_FILE: MSMg01no385_l09.b1 PHD_FILE: MSMg01no385_l09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:21 2005CHROMAT_FILE: MSMg01no385_l09.g1 PHD_FILE: MSMg01no385_l09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,198,272 - 143,198,778)(142,995,153 - 142,995,609)
sequence
CGCXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTATTACTGGCTT
TGAGCAGCCTGACTCCCAGACCCAGAGGGGGTAGAGCCAGGACCAGCACA
CTCCCCGTTTTGAGCTCTTCTTCCTGTGAGCCAGATGTAGAAATCCATAT
CTTTTCCTGTCCTCACAGAGGCAGCGGTTGCTAAGGCCAGTGCAAGCCCC
AGGTGCTCAGCACTAGGCAATCATCAGTTCTAAAAACACCTAGCTCAGGA
CAGGTGGGACCACAAGTGTCTCAGCATTGTGGGGAAGACACCCCATCAGG
GCCCCATTTTAATCTCCCTACCCTACCCAGTGGCTCACTTCCCAGCCTTC
CCCCCACAAACACTTCCTCAGGACAGCGGTGGGCAGTCTCTGCCATCTTT
AATGGCCAGTGCGGTAGTCAGAGAACACACAGGTAGACAGGACACAGCAG
GGACTGGTACAGGGTGGTCACGGCTGGGGCCACTGTGTGGAGAGGCAAGT
GTCCCGGCTCAGCAAAAGCTCTCTTTGGCAGGAGGTCCTCCAGCCGATCC
TGGTACCCACGAGTCCAATCCTCACCTTGCAGCCACTTGCCAGGGTTTCA
AGTGTGTCGTGTCATCACTTGACTCTTGGTGGATGGGAGTGTGTCGGCCT
AATTCACGAATGGACCCTCACTTGTTCTTGTCTGATGGATAATTCGACCG
TATCTTGTATATAAAGGACCGCCCTTGTTATCCCTTTCCTTTACCTTTTG


XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCCAGGAAATCCCATGCAGCCCACAGGCTCCTGAGAAAATTCT
GTCAGTGCAGATGGCCAGGACTGAACATGACAGAGGCCATGCAGTTGAAC
AGATCACCAACAGGACACGCTTGACAAGCATGCTGTCACCAAAACGGATG
GGTGCCCCAGAATAGAAGGGAGGACCCAGCAGTGGCACCGAGCACAGGGG
GTAGAGCCAAGGGACTATCCGTGGGCCGGGAAACTTCACCCAAGAACTAT
GGCTGGACTTGAAAGTCACTTGGGTTTAGTGGTGCTGTTCTGCCTCCCAC
CTGCTCCTTGCTGACACTGTCACTTGTGCCTGCCTTGCCACTGCAGGCTG
TAGGCGTTGAGCAGGCAGTTTTGGTTTCAAAGAGGAGTAAACATTATTCC
AAAGGGGCTGGAGCGATGGCTCAGTGGTTAGGAACATTTACTGCTCTTCC
AAAGGACCCAGGGTCCGCAGTCAGCACCCATGCAGCTCATAAACACGAGG
AACTCCAGCTCCAGGGGATCTCATGCCCTCTCCCTAACCCTCAAGGAACT
GTACCCCGTGTGTACACACACTCACTCTCACCCGCATTAATAAAAAACTC
TTTAAAATAATTTGTTCTTCCAAAAATTCACTCTTTATTTTGGCCCCCGC
CGTCCCCACTATATCTACCATTTTTTTTCTTTTCTTTTCTTTTCTCTCTG
TTCTTCACCTACTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no385_l09.b1 MSMg01no385_l09.b1 CHROMAT_FILE:
MSMg01no385_l09.b1 PHD_FILE: MSMg01no385_l09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:21 2005
         (508 letters)



>mm_chr5_143198072_143198979
          Length = 908

 Score =  942 bits (487), Expect = 0.0
 Identities = 502/507 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gctttgagcagcctgactcccagacccagagggggtagagccaggaccagcacactcccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 gctttgagcagcctgactcccagacccagagggggtagagccaggaccagcacactcccc 648

                                                                       
Query: 61  gttttgagctcttcttcctgtgagccagatgtagaaatccatatcttttcctgtcctcac 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 gttttgagctcttcctcctgtgagccagatgtagaaatccatatcttttcctgtcctcac 588

                                                                       
Query: 121 agaggcagcggttgctaaggccagtgcaagccccaggtgctcagcactaggcaatcatca 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 587 agaggcagcggttgctaaggcccgtgcaagccccaggtgctcagcactaggcaatcatca 528

                                                                       
Query: 181 gttctaaaaacacctagctcaggacaggtgggaccacaagtgtctcagcattgtggggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 gttctaaaaacacctagctcaggacaggtgggaccacaagtgtctcagcattgtggggaa 468

                                                                       
Query: 241 gacaccccatcagggccccattttaatctccctaccctacccagtggctcacttcccagc 300
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 467 gacaccccatcagggccccattttaatctccccaccctacccagtggctcacttcccagc 408

                                                                       
Query: 301 cttccccccacaaacacttcctcaggacagcggtgggcagtctctgccatctttaatggc 360
           | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 407 cctccccccacaaacacttcctcaggacagcggtgggcagtctctgccatatttaatggc 348

                                                                       
Query: 361 cagtgcggtagtcagagaacacacaggtagacaggacacagcagggactggtacagggtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 cagtgcggtagtcagagaacacacaggtagacaggacacagcagggactggtacagggtg 288

                                                                       
Query: 421 gtcacggctggggccactgtgtggagaggcaagtgtcccggctcagcaaaagctctcttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 gtcacggctggggccactgtgtggagaggcaagtgtcccggctcagcaaaagctctcttt 228

                                      
Query: 481 ggcaggaggtcctccagccgatcctgg 507
           |||||||||||||||||||||||||||
Sbjct: 227 ggcaggaggtcctccagccgatcctgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space:   447204
Effective search space used:   447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no385_l09.g1 MSMg01no385_l09.g1 CHROMAT_FILE:
MSMg01no385_l09.g1 PHD_FILE: MSMg01no385_l09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:21 2005
         (457 letters)



>mm_chr5_142994953_142995809
          Length = 857

 Score =  868 bits (449), Expect = 0.0
 Identities = 455/457 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccaggaaatcccatgcagcccacaggctcctgagaaaattctgtcagtgcagatggccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccaggaaatcccatgcagcccacaggctcctgagaaaattctgtcagtgcagatggccag 260

                                                                       
Query: 61  gactgaacatgacagaggccatgcagttgaacagatcaccaacaggacacgcttgacaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gactgaacatgacagaggccatgcagttgaacagatcaccaacaggacacgcttgacaag 320

                                                                       
Query: 121 catgctgtcaccaaaacggatgggtgccccagaatagaagggaggacccagcagtggcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catgctgtcaccaaaacggatgggtgccccagaatagaagggaggacccagcagtggcac 380

                                                                       
Query: 181 cgagcacagggggtagagccaagggactatccgtgggccgggaaacttcacccaagaact 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 cgagcacagggggtagagccaagggactatccgtgggtcgggaaacttcacccaagaact 440

                                                                       
Query: 241 atggctggacttgaaagtcacttgggtttagtggtgctgttctgcctcccacctgctcct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atggctggacttgaaagtcacttgggtttagtggtgctgttctgcctcccacctgctcct 500

                                                                       
Query: 301 tgctgacactgtcacttgtgcctgccttgccactgcaggctgtaggcgttgagcaggcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgctgacactgtcacttgtgcctgccttgccactgcaggctgtaggcgttgagcaggcag 560

                                                                       
Query: 361 ttttggtttcaaagaggagtaaacattattccaaaggggctggagcgatggctcagtggt 420
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttttggtttcaaagaggagcaaacattattccaaaggggctggagcgatggctcagtggt 620

                                                
Query: 421 taggaacatttactgctcttccaaaggacccagggtc 457
           |||||||||||||||||||||||||||||||||||||
Sbjct: 621 taggaacatttactgctcttccaaaggacccagggtc 657


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 857
Length adjustment: 10
Effective length of query: 447
Effective length of database: 847
Effective search space:   378609
Effective search space used:   378609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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