BAC Information

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BAC

Clone NameMSMg01-386D07
Chromosome5 (Build37)
Map Location 138,079,229 - 138,079,472
singlet/doubletsinglet
Overlap geneLrch4
Upstream geneMylc2pl, Emid2, LOC677021, Rabl5, Fis1, Cldn15, Znhit1, Plod3, LOC639992, Vgf, Ap1s1, Serpine1, Trim56, Muc3, LOC100040941, Ache, 2700038N03Rik, Ars2, Trip6, Slc12a9, Ephb4, Zan, EG665591, Epo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24
Downstream geneSap25, Irs3, Hrbl, LOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13, LOC666429, Gje1, Azgp1, EG243302, LOC100041050, Smok3a, Smok3b, Smok3c, Zkscan1, Zscan21, Zfp113, Cops6, Mcm7, Ap4m1, Taf6, 2610019P18Rik, BC038925, Gm454, BC055004, 0910001L09Rik, BC037034, Gal3st4, Gpc2, Stag3, Got2-ps1, 2610020C11Rik, LOC433955, EG666533, 1700123K08Rik, Zfp68, LOC665882, A430033K04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-386D07.T7 (MSMg01no386_d07.b1)MSMg01-386D07.TJ (MSMg01no386_d07.g1)
ACCAG489227AG489228
length724737
length of high quality
(start - end)		249 (66 - 314)247 (71 - 317)
definitionCHROMAT_FILE: MSMg01no386_d07.b1 PHD_FILE: MSMg01no386_d07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:58 2005CHROMAT_FILE: MSMg01no386_d07.g1 PHD_FILE: MSMg01no386_d07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:28:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTGCCGTAGCTCCGCGGAATTCCCCAG
AGATGGCATGAAAGGCGTGGCTCAGTGGTAGAGCCCCTGCCTAGAATCCC
CCAGGGAGAGGCTGGGGGCGTGGCTCAGTGGTAGAGCCCCTGCCTAGAAT
CCCCCAGAGAGGGGCTGGGGGCGTGGCTCAGTGTTAGAGCCCCTGCCTAG
AATTCCCTAGTGAGGGGCTGGTGGTGTGGCTTAGTGGTAGAGCCCCTGCC
TAGAATCCCCCAGAGAGGGGCTGGGGGCGTGGCTCAGGGGTAGAGCCCCT
GCCTAGAATCCCTTATTTTATAGTTAGGACTGTGAGTCTTTGGTAGAGCA
CTTCCCTAGCATGCAAGGGGTCCTTGGCTCCATCTCCAGAATTGCAAAAC
CCAAGCCTGCACTAAATGAATGACTCTACCACTGCATGACCAGTCCTTTG
GTCCTGTCCCTTGAGACTCTCTAAGCTCCTCTCACACAGAGAGCACCAGG
ACCCAGATGTTCTGGCATCTATTCTTCTCTGGGAAGCTGGGCACCCCTGG
AGGCTTACCTTATAGTACTTGTTGTTGTAGGGACAATTGCAGGAAGACTC
ATTGATACATTGATTATTACTAAACAAAAACCCAGGGTTACAGACACAGT
CAGGAATGCAGGGGGGCTGGCAGCTGGGCTTGGTGCTCTCACAGGATGCT
GGGCATGCTCACAATTCTATGTGG

CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTTCCAACATTCTGTAGAACCGAAGTCTGAGAGGCATTTGCAT
CTGTCCCTGCCAGGCCCTGAGCCCTTCCTTACCTGTCCTTCCTGGGGGAC
CCCCATCCCCCACTCTGTTGCTGTTGCTTCCGCTCCCGTTCCTGCCACAA
CTGCAAAGTGTCTGGGCGCCGCCTCTCCTCCCCTGCAGGCTCCTCTCGCC
TGGCAGAAGACAGGACAAGAGGGACCTTTGTCAGGTGAAGGGGAGGTGCC
CAGGCTGTTGAGTATTAGGTATAAGAGTGGGCTTGGGGGTCGGAATACCT
GCTGCTATATGTCTTCTCCACATCCCCTGCTACAAGGCTTAATTCAGAAT
GCAGCTGCTCCCCCCCACAGTACAGCATAGCTGAAGAGAGGTCTGGCCCC
ATTTACACTGATCTCCCCATCAGTGCCTCTCTACCTGCCCAGGTCCATGC
CTGGCTCCTAACCTCAGTTGCACTTCGCTCTTCATCTTCCCCAGGAACGT
GGCCTCCAATAATGTCAATCCGTTCCTGCATTCCATCGTATTGTTGACCT
TTTTCCGTCCCTCCAGCATTTTTTATGGGCCTTCTTGCCCAAACTTCACC
CACTGATTTCTCTTTTTATAACCACCTCGATAACCATCGTCATCATTCCT
TACACGGCCAAATTCTCTCCCCAATATATTACTACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no386_d07.g1 MSMg01no386_d07.g1 CHROMAT_FILE:
MSMg01no386_d07.g1 PHD_FILE: MSMg01no386_d07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:28:58 2005
         (247 letters)



>mm_chr5_138079029_138079675
          Length = 647

 Score =  472 bits (244), Expect = e-138
 Identities = 244/244 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtagaaccgaagtctgagaggcatttgcatctgtccctgccaggccctgagcccttcctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gtagaaccgaagtctgagaggcatttgcatctgtccctgccaggccctgagcccttcctt 385

                                                                       
Query: 61  acctgtccttcctgggggacccccatcccccactctgttgctgttgcttccgctcccgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 acctgtccttcctgggggacccccatcccccactctgttgctgttgcttccgctcccgtt 325

                                                                       
Query: 121 cctgccacaactgcaaagtgtctgggcgccgcctctcctcccctgcaggctcctctcgcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cctgccacaactgcaaagtgtctgggcgccgcctctcctcccctgcaggctcctctcgcc 265

                                                                       
Query: 181 tggcagaagacaggacaagagggacctttgtcaggtgaaggggaggtgcccaggctgttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tggcagaagacaggacaagagggacctttgtcaggtgaaggggaggtgcccaggctgttg 205

               
Query: 241 agta 244
           ||||
Sbjct: 204 agta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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