Query= MSMg01no386_j07.b1 MSMg01no386_j07.b1 CHROMAT_FILE:
MSMg01no386_j07.b1 PHD_FILE: MSMg01no386_j07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:25 2005
(247 letters)
>mm_chr5_85823857_85824503
Length = 647
Score = 418 bits (216), Expect = e-121
Identities = 237/246 (96%), Gaps = 4/246 (1%)
Strand = Plus / Plus
Query: 1 tggaaatctaacgaactagaaccaggattcatatcttaggattaagtctacacttctctt 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 tggaaatctaacgaactagaaccaggattcatatcttaggattaagtccacacttctctt 260
Query: 61 ataataagtaccaaacaaaagaaactatcccacagcattttacctcaacaagtctttttt 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 ataataagtaccaaacaaaagaaactatcccacagcattttacctcaacaagactttttt 320
Query: 121 tttttttttttttttgatttttgatttttgattttttttgagacagggtttctctgtgta 180
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttttttttttttt----tttgatttttgattttttttgagacagggtttctctgtgta 376
Query: 181 ttcctggctgtcctggaactggctgtcctggaactcactttgtagaccaggctggcctcg 240
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 377 gccctggctgtcctggaactggctgtcctggaactcactttgtagtccaggctggcctcg 436
Query: 241 aactta 246
||||||
Sbjct: 437 aactta 442
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space: 151844
Effective search space used: 151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no386_j07.g1 MSMg01no386_j07.g1 CHROMAT_FILE:
MSMg01no386_j07.g1 PHD_FILE: MSMg01no386_j07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:25 2005
(659 letters)
>mm_chr5_85867396_85868455
Length = 1060
Score = 1230 bits (636), Expect = 0.0
Identities = 654/660 (99%), Gaps = 1/660 (0%)
Strand = Plus / Minus
Query: 1 tttgtacatatcatctgaagactttaagaaacaaagccatttttataatatacatgcatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 tttgtacatatcatctgaagactttaagaaacaaagccatttttataatatacatgcatt 628
Query: 61 ttattcacacaatcatctagtgtatccactctaccctccatctctctgtccaccacacat 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ttactcacacaatcatctagtgtatccactctaccctccatctctctgtccaccacacat 568
Query: 121 ctcacctagtcaattttctcttacccatttctgtttccaaatcttctctgctgaatactg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ctcacctagtcaattttctcttacccatttctgtttccaaatcttctctgctgaatactg 508
Query: 181 gacttcttagaattctttatcatttagtgacattatcttttataagaattggcaaatatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gacttcttagaattctttatcatttagtgacattatcttttataagaattggcaaatatt 448
Query: 241 ttaaaccctgctacagattttgcctttaaagttgcttagcttct-aaaaaaagtattata 299
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 447 ttaaaccctgctacagattttgcctttaaagttgcttagcttctaaaaaaaagtattata 388
Query: 300 atatggaaacattcagactctgagaacaaaggaatttatgcagcattctatgtttcttct 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 atatggaaacattcagactctgagaacaaaggaatttatgcagcattctatgtttcttct 328
Query: 360 tgtcagcatggtgggattccaatacatagtttagtttctgtaggtattacatgagaatat 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tgtcagcatggtgggattccaatacatagtttagtttctgtaggtattacatgagaatat 268
Query: 420 ctaaggaaaattgattgaggaagtcatgtctaacaaaatgttatagatatattgagttta 479
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 267 ctaaggaaaattggttgaggaagtcatgtctaacaaaatgttatagatatatttagttta 208
Query: 480 tacccagtagaaggcctttctaacttgttatatcttcttcattttctttcttcaatgact 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 tacccagtagaaggcctttctaacttgttatatcttcttcattttctttcttcaatgact 148
Query: 540 tgaagttcttgccatacaggtctttatttcaaattgaagtagtgtggattatcaggcata 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 tgaagttcttgccatacaggtctttatttcaaattgaagtagtgtggattatcaggcata 88
Query: 600 cagttagaaagtggcacgtaagaagaactttatggaccagttatgaaaggctgcacctgg 659
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 87 cagttagaaagtggcacgtaagaagagctttatggaccagttatgaacggctgcacctgg 28
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1060
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1050
Effective search space: 681450
Effective search space used: 681450
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
