BAC Information

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BAC

Clone NameMSMg01-386M20
Chromosome5 (Build37)
Map Location 72,518,127 - 72,692,118
singlet/doubletdoublet
Overlap geneGabrb1, Commd8, Atp10d, Corin
Upstream geneLOC635092, 4930503B16Rik, Gabra4, LOC666545
Downstream geneNfxl1, Zar1, EG545758, Cnga1, LOC384275, Npal1, Txk, Tec, Slain2, Slc10a4, LOC667127, Fryl, Ociad1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-386M20.T7 (MSMg01no386_m20.b1)MSMg01-386M20.TJ (MSMg01no386_m20.g1)
ACCAG489685AG489686
length759748
length of high quality
(start - end)		674 (47 - 720)633 (67 - 699)
definitionCHROMAT_FILE: MSMg01no386_m20.b1 PHD_FILE: MSMg01no386_m20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:41 2005CHROMAT_FILE: MSMg01no386_m20.g1 PHD_FILE: MSMg01no386_m20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,691,447 - 72,692,118)(72,518,127 - 72,518,759)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCATGACTCCGCGGA
ATTCTATCCTTTCTGTCTTCAAATTAAGCTTAAAATCTCTACCAGATTTG
TTCCCGTTACTGGGAATTTTCGGAGTATGTCACTTAGATGACTGTGATGT
CAAAAGCCAGGTCAATCCTTGAGGAAATAATTTGTTTGCTTATGTGGGAA
TGAATAAGAATCTTTCCATTCCGCAAAACACACAAATTAAAAAGGAGAAA
AAAATTAAATAACATTCCACACCCAATTAATTCTGAAAATTAGTCTGCTT
GTATTCACCCAAAACAGAAAAGTTACTTAAATATATTTCAAAGTGCAGCA
AAATGTTGCATGGAGTATATAACATTTTGCAATTTCCCCCTCATGATGTC
TAACATCCGGTATTGCCATTTGCCTCATTGATAATTAAAACTAAATTTTA
AGGATGCTTTTAAGCACTGGGCCACCTTATGGGAATCAATTTCCAAAGCA
ATTAGTGGTTACAAGTATTTTTTCCCACTAAAAAGTTTCAAAACACAAAC
CTTCATACTAAATTAATTAGCCAGACATGAACTATGTAACATGCAAATGC
CTTTTTGAACAAGTAGGATGCACTGCTAAACTTCACCAGCAACCAAACTG
CCTCAGTATTGCTTACAGGGACTACCTGCAATTTTATATGTGTATTTTGT
ACTCTTTTTCTAGATAGTTCAAATGCAAAACATTGTTTCAACCCCTATTC
TCCATGTTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTGCGAAAAACAGAAAGCATGAAGCATGAAAAGATGAGTATTTCAG
AGGTCCGCAGCTCATGCTTAAGTCGGGAACATACTGCTGGCCTTGGATCC
TGGACCTCAGTGCTGCTCAGCATCTCCCTTCGAGGTGGCTGGAACATGGA
TCCTATCTTTGATGAAACCGATTGTTCTGATTTAGCAGCTTGAACTCTGC
AGTTCCCACTGACAAGCCTGTGATGTTTCCTCATGAACATTAAACTTCAT
GCTTTTATCTAAATCTTGTTTGATTCACTATTTTGATCCGTGAACATGTA
GGTTCCCTCCCACTTCATCTCTTAGTTCCAATTTCCTTTAAATTGGCGTT
ATTTTCAGTAGATATTTCTCTCACTGTAACCCCAAAAGCTCTACCTTTAT
CATGTCAAGATCTATAATCCCAGCCCAGCCATAAGTACTTTCTTTCTAAT
GCCAAACCTAATAATAACAACCAAAATAAGCCCTGGGTTTTAGCCTATTT
GTATTTAACCGACTTCAGTCACATTGTCATGCGGAATTTGGTCTTTTTAA
TGAATAAAACAGAAAACACCAAATACTCAGATCTTAGCAACACACATCTA
TGGAGTCTAAAGGATGCCATCAGGCCCCACTGAAGCCATATGCACAATGG
AATGCCAGAGTGGCTATACCAGAGGAAAGTTAGGTGGAATCAGAAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no386_m20.b1 MSMg01no386_m20.b1 CHROMAT_FILE:
MSMg01no386_m20.b1 PHD_FILE: MSMg01no386_m20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:41 2005
         (674 letters)



>mm_chr5_72691245_72692318
          Length = 1074

 Score = 1261 bits (652), Expect = 0.0
 Identities = 667/672 (99%)
 Strand = Plus / Minus

                                                                       
Query: 3   gaattctatcctttctgtcttcaaattaagcttaaaatctctaccagatttgttcccgtt 62
           |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 874 gaattctatcctttctgtattcaaattaagcttaaaatctccaccagatttgttcccgtt 815

                                                                       
Query: 63  actgggaattttcggagtatgtcacttagatgactgtgatgtcaaaagccaggtcaatcc 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 actgggaattttcggagtatgtcacttagatgactgtgatgtcaaaagccaggtcaatcc 755

                                                                       
Query: 123 ttgaggaaataatttgtttgcttatgtgggaatgaataagaatctttccattccgcaaaa 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 ttgaggaaataatttgtttgcttatgtgggaatgaataagaatctttccattccgcaaaa 695

                                                                       
Query: 183 cacacaaattaaaaaggagaaaaaaattaaataacattccacacccaattaattctgaaa 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 cacacaaattaaaaaggagaaaaaaattaaataacattccacacccaattaattctgaaa 635

                                                                       
Query: 243 attagtctgcttgtattcacccaaaacagaaaagttacttaaatatatttcaaagtgcag 302
           ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||
Sbjct: 634 attagtctgcttgtattcacccaaaacagaaaagttacagaaatatatttcaaagtgcag 575

                                                                       
Query: 303 caaaatgttgcatggagtatataacattttgcaatttccccctcatgatgtctaacatcc 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 caaaatgttgcatggagtatataacattttgcaatttccccctcatgatgtctaacatcc 515

                                                                       
Query: 363 ggtattgccatttgcctcattgataattaaaactaaattttaaggatgcttttaagcact 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 ggtattgccatttgcctcattgataattaaaactaaattttaaggatgcttttaagcact 455

                                                                       
Query: 423 gggccaccttatgggaatcaatttccaaagcaattagtggttacaagtattttttcccac 482
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 gggccactttatgggaatcaatttccaaagcaattagtggttacaagtattttttcccac 395

                                                                       
Query: 483 taaaaagtttcaaaacacaaaccttcatactaaattaattagccagacatgaactatgta 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 taaaaagtttcaaaacacaaaccttcatactaaattaattagccagacatgaactatgta 335

                                                                       
Query: 543 acatgcaaatgcctttttgaacaagtaggatgcactgctaaacttcaccagcaaccaaac 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 acatgcaaatgcctttttgaacaagtaggatgcactgctaaacttcaccagcaaccaaac 275

                                                                       
Query: 603 tgcctcagtattgcttacagggactacctgcaattttatatgtgtattttgtactctttt 662
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tgcctcagtattgcttacagggactacctgcaattttatatgtgtattttgtactctttt 215

                       
Query: 663 tctagatagttc 674
           ||||||||||||
Sbjct: 214 tctagatagttc 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space:   706496
Effective search space used:   706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no386_m20.g1 MSMg01no386_m20.g1 CHROMAT_FILE:
MSMg01no386_m20.g1 PHD_FILE: MSMg01no386_m20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:41 2005
         (633 letters)



>mm_chr5_72517927_72518959
          Length = 1033

 Score = 1162 bits (601), Expect = 0.0
 Identities = 625/633 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaaagcatgaagcatgaaaagatgagtatttcagaggtccgcagctcatgcttaagtcgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaaagcatgaagcatgaaaagatgagtatttcagaggtccgcagctcatgcttaagtcgg 260

                                                                       
Query: 61  gaacatactgctggccttggatcctggacctcagtgctgctcagcatctcccttcgaggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaacatactgctggccttggatcctggacctcagtgctgctcagcatctcccttcgaggt 320

                                                                       
Query: 121 ggctggaacatggatcctatctttgatgaaaccgattgttctgatttagcagcttgaact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggctggaacatggatcctatctttgatgaaaccgattgttctgatttagcagcttgaact 380

                                                                       
Query: 181 ctgcagttcccactgacaagcctgtgatgtttcctcatgaacattaaacttcatgctttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgcagttcccactgacaagcctgtgatgtttcctcatgaacattaaacttcatgctttt 440

                                                                       
Query: 241 atctaaatcttgtttgattcactattttgatccgtgaacatgtaggttccctcccacttc 300
           ||||||| || | |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 atctaaacctagcttgattcactattttgatccgtgaacatgtaggtaccctcccacttc 500

                                                                       
Query: 301 atctcttagttccaatttcctttaaattggcgttattttcagtagatatttctctcactg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atctcttagttccaatttcctttaaattggcgttattttcagtagatatttctctcactg 560

                                                                       
Query: 361 taaccccaaaagctctacctttatcatgtcaagatctataatcccagcccagccataagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaccccaaaagctctacctttatcatgtcaagatctataatcccagcccagccataagt 620

                                                                       
Query: 421 actttctttctaatgccaaacctaataataacaaccaaaataagccctgggttttagcct 480
           ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 621 actttctttctaatgccaaacttaataataacaaccaaaataagccctgggtttcagcct 680

                                                                       
Query: 481 atttgtatttaaccgacttcagtcacattgtcatgcggaatttggtctttttaatgaata 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atttgtatttaaccgacttcagtcacattgtcatgcggaatttggtctttttaatgaata 740

                                                                       
Query: 541 aaacagaaaacaccaaatactcagatcttagcaacacacatctatggagtctaaaggatg 600
           |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 741 aaacagaaaacaccaaatactcaggtcttagcaacacacatctatggagcctaaaggatg 800

                                            
Query: 601 ccatcaggccccactgaagccatatgcacaatg 633
           |||||||||||||||||||||||||||||||||
Sbjct: 801 ccatcaggccccactgaagccatatgcacaatg 833


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space:   637329
Effective search space used:   637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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