BAC Information

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BAC

Clone NameMSMg01-386O14
Chromosome5 (Build37)
Map Location 87,440,047 - 87,440,717
singlet/doubletsinglet
Overlap geneUgt2b35
Upstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c, Tmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik, LOC622056, Ugt2b34, Ugt2b1, LOC665424, LOC545767
Downstream geneUgt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818, Ugt2b38, Ugt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2, Csn1s2a, Csn1s2b, 4930432K09Rik, EG654494, Odam, BC037156, Csn3, BC051076, 2310003L06Rik, 4931407G18Rik, Smr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-386O14.T7 (MSMg01no386_o14.b1)MSMg01-386O14.TJ (MSMg01no386_o14.g1)
ACCAG489769AG489770
length748739
length of high quality
(start - end)		677 (72 - 748)668 (69 - 736)
definitionCHROMAT_FILE: MSMg01no386_o14.b1 PHD_FILE: MSMg01no386_o14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:49 2005CHROMAT_FILE: MSMg01no386_o14.g1 PHD_FILE: MSMg01no386_o14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:29:49 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAACCGCGGA
ATTCTCTGATCTTTTCTCAATAACCACATATATATATATATATATATATA
TATATATATATATATATATATACACACAAAGAAAATGTGCCTTGATAAAG
TCATCATTGAATGCTTAAAAGGTAGTTTATAAATTAGAACAATGCTGAAG
TTTCATTCATGTAGTGCATTGTCAATGAGCTCTACTCATTCTTCCTTTTC
TTTGCCTTCTTTACAAAGAATTGATAAACAAACAAGCAGCACTTTACAGG
AAGGACTGCAGTGGCCACCACACAGACTAGTAGGAATCCAATCACATCCA
GAGAGTGGTACTGGTACCAGGTGAGGTTGTGTGCAAGTGGTCTCAGGTGC
TTGGCTCCTTTGTGGCGCATGACAAACTCAATCCAAAATATAGTCCTGTT
CAGTGGCTTCATAGGCTGGTCATGGTGAATGGTTGACAACCACATCACAT
TCTCTTTATAACTGTAAGAGATAAAATTGTCATGCAAAAAATCATAGAAT
GAATGAAAAATACGCATTTCTAAAATTTTGTGTAGATGATAAAGATGATT
TTACAAAAAGTAGAAGGAAAATGAATTATGCTTAATATTTATGCCCAGGA
AGATGTTAGTAGGCATGTTTGAACTTCTTGAGTAAGCAAAATGTAGGTAT
ATAAATTGTAAAGTAGAAAGACAAAACATTCTGAAGTTATAGCGTGTA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTATTATTGATCTCCTTCAGTCCTTGGGCATT
TTAGAAATTGACCCGATTTTTTAAATCTCAAATTGATTCATCTCTTTCAA
GCGCATTTGTTTCAGTTCATTACCATCGGCTGGACTTTGGCAATAAACAG
TCATCCCAGGCTAGACACATCAAAAAATTGGAACTTGAAGCCGTCGCCCG
TGAGAGTTGTAAGACTAAGTACTGCACAGAGATTAGTCTGGAAGCTGTTA
GACAGTCTCTGAGAGGCATGTCTGATTGCATGAAGGTTGAGTGCCCTAGG
GTCCTTCCCTCAAGAAAAACGGCACGGGAGCAGGTCAGGGTTACTCAGGG
TAAAAATCTGTGGGCCTAAGAGTCAATCCTGTACATGGCCACTAACATTG
CACACTGGGGCTCAGACCTCTACCTCTACCCACGGAGCTTGCTTCGTTCC
TAAATCCCTTGGCTGGCCCAGGTTATACCCAACAGACTGAAACCATTAAT
TCAAGCCTCATAGATGACTTGTCCTTGTGTCCTTCGTGGTTTTAGAGAAT
CACCCGGTGAGCAAACAGACGTTTAGGCGATTGTTAAAAACGTGGCTACA
AATTTATTATATAATATACCTTTATAAAAATATTAAAACGGGGGAGATGT
TGGGAGCTAGTAAGACAACTCTTGATCTCTAAATTGGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no386_o14.b1 MSMg01no386_o14.b1 CHROMAT_FILE:
MSMg01no386_o14.b1 PHD_FILE: MSMg01no386_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:29:49 2005
         (677 letters)



>mm_chr5_87439796_87440872
          Length = 1077

 Score = 1243 bits (643), Expect = 0.0
 Identities = 664/671 (98%)
 Strand = Plus / Minus

                                                                       
Query: 7   atatatatatatatatatatatatatatatatatatatatatatacacacaaagaaaatg 66
           ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct: 922 atatatatatatatatatatatatatatatatatataaatatatacacacaaagaagatg 863

                                                                       
Query: 67  tgccttgataaagtcatcattgaatgcttaaaaggtagtttataaattagaacaatgctg 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 tgccttgataaagtcatcattgaatgcttaaaaggtagtttataaattagaacaatgctg 803

                                                                       
Query: 127 aagtttcattcatgtagtgcattgtcaatgagctctactcattcttccttttctttgcct 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 aagtttcattcatgtagtgcattgtcaatgagctctactcattcttccttttctttgcct 743

                                                                       
Query: 187 tctttacaaagaattgataaacaaacaagcagcactttacaggaaggactgcagtggcca 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 tctttacaaagaattgataaacaaacaagcagcactttacaggaaggactgcagtggcca 683

                                                                       
Query: 247 ccacacagactagtaggaatccaatcacatccagagagtggtactggtaccaggtgaggt 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ccacacagactagtaggaatccaatcacatccagagagtggtactggtaccaggtgaggt 623

                                                                       
Query: 307 tgtgtgcaagtggtctcaggtgcttggctcctttgtggcgcatgacaaactcaatccaaa 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tgtgtgcaagtggtctcaggtgcttggctcctttgtggcgcatgacaaactcaatccaaa 563

                                                                       
Query: 367 atatagtcctgttcagtggcttcataggctggtcatggtgaatggttgacaaccacatca 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 atatagtcctgttcagtggcttcataggctggtcatggtgaatggttgacaaccacatca 503

                                                                       
Query: 427 cattctctttataactgtaagagataaaattgtcatgcaaaaaatcatagaatgaatgaa 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 cattctctttataactgtaagagataaaattgtcatgcaaaaaatcatagaatgaatgaa 443

                                                                       
Query: 487 aaatacgcatttctaaaattttgtgtagatgataaagatgattttacaaaaagtagaagg 546
           ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 442 aaatatgcatttctaaaattttgtgtagatggtaaagatgattttacaaaaagtagaagg 383

                                                                       
Query: 547 aaaatgaattatgcttaatatttatgcccaggaagatgttagtaggcatgtttgaacttc 606
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aaaatgaattatgcttaatatttatgcccaggaagatgttagtaggcatgtttgaacttc 323

                                                                       
Query: 607 ttgagtaagcaaaatgtaggtatataaattgtaaagtagaaagacaaaacattctgaagt 666
           |||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 322 ttgagtaagcaaaatggaggtatataaatagaaaagtagaaagacaaaacattctgaagt 263

                      
Query: 667 tatagcgtgta 677
           |||||||||||
Sbjct: 262 tatagcgtgta 252



 Score = 87.7 bits (45), Expect = 3e-21
 Identities = 45/45 (100%)
 Strand = Plus / Plus

                                                        
Query: 7   atatatatatatatatatatatatatatatatatatatatatata 51
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 887 atatatatatatatatatatatatatatatatatatatatatata 931



 Score = 87.7 bits (45), Expect = 3e-21
 Identities = 45/45 (100%)
 Strand = Plus / Plus

                                                        
Query: 7   atatatatatatatatatatatatatatatatatatatatatata 51
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 889 atatatatatatatatatatatatatatatatatatatatatata 933



 Score = 87.7 bits (45), Expect = 3e-21
 Identities = 45/45 (100%)
 Strand = Plus / Plus

                                                        
Query: 7   atatatatatatatatatatatatatatatatatatatatatata 51
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 891 atatatatatatatatatatatatatatatatatatatatatata 935



 Score = 87.7 bits (45), Expect = 3e-21
 Identities = 45/45 (100%)
 Strand = Plus / Plus

                                                        
Query: 7   atatatatatatatatatatatatatatatatatatatatatata 51
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893 atatatatatatatatatatatatatatatatatatatatatata 937



 Score = 87.7 bits (45), Expect = 3e-21
 Identities = 45/45 (100%)
 Strand = Plus / Plus

                                                        
Query: 7   atatatatatatatatatatatatatatatatatatatatatata 51
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 atatatatatatatatatatatatatatatatatatatatatata 939



 Score = 87.7 bits (45), Expect = 3e-21
 Identities = 45/45 (100%)
 Strand = Plus / Plus

                                                        
Query: 7   atatatatatatatatatatatatatatatatatatatatatata 51
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 atatatatatatatatatatatatatatatatatatatatatata 941



 Score = 87.7 bits (45), Expect = 3e-21
 Identities = 45/45 (100%)
 Strand = Plus / Plus

                                                        
Query: 7   atatatatatatatatatatatatatatatatatatatatatata 51
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 899 atatatatatatatatatatatatatatatatatatatatatata 943



 Score = 87.7 bits (45), Expect = 3e-21
 Identities = 45/45 (100%)
 Strand = Plus / Plus

                                                        
Query: 7   atatatatatatatatatatatatatatatatatatatatatata 51
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 atatatatatatatatatatatatatatatatatatatatatata 945



 Score = 87.7 bits (45), Expect = 3e-21
 Identities = 45/45 (100%)
 Strand = Plus / Plus

                                                        
Query: 7   atatatatatatatatatatatatatatatatatatatatatata 51
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 903 atatatatatatatatatatatatatatatatatatatatatata 947



 Score = 87.7 bits (45), Expect = 3e-21
 Identities = 45/45 (100%)
 Strand = Plus / Plus

                                                        
Query: 7   atatatatatatatatatatatatatatatatatatatatatata 51
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905 atatatatatatatatatatatatatatatatatatatatatata 949



 Score = 85.8 bits (44), Expect = 1e-20
 Identities = 44/44 (100%)
 Strand = Plus / Plus

                                                       
Query: 8   tatatatatatatatatatatatatatatatatatatatatata 51
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 tatatatatatatatatatatatatatatatatatatatatata 929



 Score = 85.8 bits (44), Expect = 1e-20
 Identities = 44/44 (100%)
 Strand = Plus / Plus

                                                       
Query: 7   atatatatatatatatatatatatatatatatatatatatatat 50
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 907 atatatatatatatatatatatatatatatatatatatatatat 950



 Score = 80.0 bits (41), Expect = 6e-19
 Identities = 44/45 (97%)
 Strand = Plus / Plus

                                                        
Query: 7   atatatatatatatatatatatatatatatatatatatatatata 51
           |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 879 atatatttatatatatatatatatatatatatatatatatatata 923



 Score = 80.0 bits (41), Expect = 6e-19
 Identities = 44/45 (97%)
 Strand = Plus / Plus

                                                        
Query: 7   atatatatatatatatatatatatatatatatatatatatatata 51
           |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 881 atatttatatatatatatatatatatatatatatatatatatata 925



 Score = 78.1 bits (40), Expect = 2e-18
 Identities = 43/44 (97%)
 Strand = Plus / Plus

                                                       
Query: 8   tatatatatatatatatatatatatatatatatatatatatata 51
           ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 878 tatatatttatatatatatatatatatatatatatatatatata 921


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 113
Number of extensions: 55
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 19
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space:   711689
Effective search space used:   711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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