BAC Information

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BAC

Clone NameMSMg01-387E03
Chromosome5 (Build37)
Map Location 118,072,348 - 118,072,780
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC433943, Gm1684, LOC665073, Suds3, Taok3, Pebp1, LOC100042313, LOC100039359, BC023744, LOC667175, Wsb2, Rfc5, Ksr2
Downstream geneNos1, Fbxo21, Tesc, Fbxw8, Hrk, Tmem118, 2410131K14Rik, LOC665162, Thrap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-387E03.T7 (MSMg01no387_e03.b1)MSMg01-387E03.TJ (MSMg01no387_e03.g1)
ACCAG490033AG490034
length868770
length of high quality
(start - end)
81 (110 - 190)432 (85 - 516)
definitionCHROMAT_FILE: MSMg01no387_e03.b1 PHD_FILE: MSMg01no387_e03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:15 2005CHROMAT_FILE: MSMg01no387_e03.g1 PHD_FILE: MSMg01no387_e03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAATCCGCGGAAT
TCAATCTTTTTTTCTGTGTCTCACCTCCCCCTTCCCCCAATCTACGCCTT
AGAAAACCCGATGCGTGAGAAAAAAAAAATCCCCATTTCTAAAACAATCG
TTTGATGTGTGTGTGTGTGTATGTGTGGCGTCTTTGCACCTCCCAAATGT
GTAAATGTTACGATTGCCTGCACCGCTTCTTCGCACTAGGTGGTGTGTGG
AAAATGCCCTTGGTCCGCCTCGTCCCGACTTGTATCATATTCCCTCAGAA
GACTGCACCCTTCCTTGCCTTTTTTTCCCCATCTCCTCTCCACCATACCT
CCACCTCACTTTCCACCTCCCTGTTATGATATCCCGTCATCTCCCCTCTC
CTCCCCCTCCTTTCCCTTTTTTTATCCCCCCCCCCTCCCCCTCTTACTCC
CTTCTCCCTTCTCCTTTCCCCCCCCTTTCCTTCCTCCCCTCCTTTCACCT
CCTCCCTCTCATTTTTTTCTTTTCTCCTTTCTCCCCCCTCTTCCCCTTTC
CCCCCCCCCCCCCTCTTCCCCCCCCTCCCCCCATACCCTTTTTTACCCCC
CCTTGTCCCTCTCCCCATCTTTCCTTCTCCTCCCCTCCCTCCCCCCCCTT
TCCCCCCCCCCCCTTCTTCCCTCCCCCCTTTCTTTCCATCCCCCCCATTT
TTATCCCCCCCTTCTTAATATCATTACACTCTTATCCCTCCTCCTTTTCC
TTTCTTCCCTCCCCTCTTCTTCCCTTTTTCATTCTTTCTTCCTTCCATCA
CCCCTTCCCTCTTCTCCCTTTCTTTTATTCTTTACACCCCCCCTTTTTAC
CCCTCTTATTTTCTCATN
CCCCCCCACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACACAATGGACGCCTC
AGAGCCTGGAATTCTGAACTAGATGCCAAGCAACTCCTGGGTCTGACGGG
CCAGCACAAGGACGGGACCCAGGCATCAACGTCAGCACCACCATTTAATC
CTTCCCAGTAAGCAGCACCCTTCGGGTCAGCCCTATGGGTATATATTCCC
TATTGCAGTTGCCTCCCCTGAGCCAGGATCTCCCCACAGTAGGATGATCG
GTCCCGGTTGTAAGATGCGCCTCCGGTTCAGGCTGCCAGCTTCTACAAAG
ATGCGCACGTCTCCTCCCCCTCTTCCAGGGGTAATGAGCCTTGGCTTCAA
GCCTCATTAAACCCCATTATATAATCAGCCCCATCCCGGGTATCTTTATA
ACCCCAGCAGTTGCCTTGGTGGGAACATGGACGGCGGTTCAGCTTCGTCA
CCTTCACTGCCACCTGCTATAGTCACCCCCTGTCTCACCCGGATCTGACT
CACCCTTCACGTTAACCATAAGGCCGAGCCTCTTGGTCTGGCGGACCACC
TCCTCTCTCCATGGTTCACGGACCTAGGAAAAGCGTACTGTCTTTACAGC
ACTGGTCGTTTGTCCCAAAATACATCATTTTGTTTCTATCCCCATATATT
ACGTCATATCCTTCCCTCTCCACGTTTCCCTCGCGTTCTCTCCTTCTTTT
CCTCTCCCCCATCCCTCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no387_e03.g1 MSMg01no387_e03.g1 CHROMAT_FILE:
MSMg01no387_e03.g1 PHD_FILE: MSMg01no387_e03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:16 2005
         (432 letters)



>mm_chr5_118072148_118072980
          Length = 833

 Score =  737 bits (381), Expect = 0.0
 Identities = 420/433 (96%), Gaps = 1/433 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acacaatggacgcctcagagcctggaattctgaactagatgccaagcaactcctgggtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 633 acacaatggacgcctcagagcctggaattctgaactagatgccaagcaagtcctgggtct 574

                                                                       
Query: 61  gacgggccagcacaaggacgggacccaggcatcaacgtcagcaccaccatttaatccttc 120
           ||||||||||||||||| | |||||||| || |||| |||||||||||||||||||||||
Sbjct: 573 gacgggccagcacaagggcaggacccagacaccaacatcagcaccaccatttaatccttc 514

                                                                       
Query: 121 ccagtaagcagcacccttcgggtcagccctat-gggtatatattccctattgcagttgcc 179
           ||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||
Sbjct: 513 ccagtaagcagcacccttcgggtcagccccatggggtatatgttccctattgcagttgcc 454

                                                                       
Query: 180 tcccctgagccaggatctccccacagtaggatgatcggtcccggttgtaagatgcgcctc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tcccctgagccaggatctccccacagtaggatgatcggtcccggttgtaagatgcgcctc 394

                                                                       
Query: 240 cggttcaggctgccagcttctacaaagatgcgcacgtctcctccccctcttccaggggta 299
           |||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||
Sbjct: 393 cggttcaggctgccagcttctacagagatgcgcacgtctcctccccctcctctaggggta 334

                                                                       
Query: 300 atgagccttggcttcaagcctcattaaaccccattatataatcagccccatcccgggtat 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 atgagccttggcttcaagcctcattaaaccccattatataatcagccccatcccgggtat 274

                                                                       
Query: 360 ctttataaccccagcagttgccttggtgggaacatggacggcggttcagcttcgtcacct 419
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 273 ctttataaccccagcagttgccttggtgggaacatggccggcggttcagcttcgtcacct 214

                        
Query: 420 tcactgccacctg 432
           |||||||||||||
Sbjct: 213 tcactgccacctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 833
Length adjustment: 9
Effective length of query: 423
Effective length of database: 824
Effective search space:   348552
Effective search space used:   348552
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)