BAC Information

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BAC

Clone NameMSMg01-387G14
Chromosome5 (Build37)
Map Location 18,464,013 - 18,464,465
singlet/doubletsinglet
Overlap genenone
Upstream geneGnat3, Gnai1, LOC100041818, LOC668167
Downstream gene4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-387G14.T7 (MSMg01no387_g14.b1)MSMg01-387G14.TJ (MSMg01no387_g14.g1)
ACCAG490150AG490151
length758791
length of high quality
(start - end)
---443 (80 - 522)
definitionCHROMAT_FILE: MSMg01no387_g14.b1 PHD_FILE: MSMg01no387_g14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:27 2005CHROMAT_FILE: MSMg01no387_g14.g1 PHD_FILE: MSMg01no387_g14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:30:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATTTGGGCCGTAAACCACTCCTATTCGACAGACCCCGGAATCAGCGGTT
TTTACTGAAGCTGAATACACTACACTTCCTATGCCTATCATTAACATGGA
GGCTGCCCGACTGCCTGGTTTTGCGTGCACTTCACCCAAGCTGGAGTTAT
AACAGACAAAGGAACTCCTTGAGCAATGCCTCCATGATATCCGTTGCCAC
CACTTTTCCATCTATTTAAGGGGGGAGCCCTCCTTTAACCGTCCACCTCT
GCCCCCCATCTCGCATCCCTACCACACCTCTCTGACTCCCCTCTGAAACC
CAGCCCTCTAGAATATCTTTCTCTGGCCCCTGCTTCACCCCCTCCATCCT
CACCTGCTTGACTCCCCTCCTGACCCTCCTCGCTGATTCCAATCATCCGT
GCATTAGCATCCCACTCACCCCCCTTCTACCCCCATCTTCTTCTCGCTCA
TCACTCCTCCTCCCTTACCCATCCACTCCCCCCCCCCCCCCTTTCTCTTC
CCCCCCCCCTCCCCCTTCCCCCCTTTTTCCCCTTCCCCCTACCCCCTTAC
TCCCCCTCCCCTTCCCCAATTCCCCACCACGCCCCCTTTCCCCTTTCCCT
ACCTTTCCCTCCCATCTCTTCCCCCACTCCCCCCTCTCATTTCTCCCCCT
TCACTATTGTTATTTTTCCTCCTCACCCTACATCCGCCTTTTTCTTCCCC
TACATTCCACCCACTCCCCCTCTACACCTTCCCCCCTTTTTCCCCCCCTC
TCCTCCCG
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTAGGACCATGATGAAGTCA
AGTCTTTCCAGATGAGACAAATCTTAAAATATAACAGAAAGAAAATAGGA
TATGAATTCCAGGCATCCAGAGGCTTCAAGTAGACAAGTAGGGACATGTA
ATACAATTCTGATGTGTGTGTGCTCTGAAGACAGAAATTTTTATTAATAA
ACGTCCTGGAAGATGGGAAATACCTCAGCCTCTGAGACTGTAACAACAAT
TTGGTAAGACTTGTTGAAACTCCTGGTGAAGCAGAAGAGAAATGCTGATG
GGAGATTGCTTATCAGAAGCACGCATCAGGGTAGACACAGGAGGCAGAAA
GGTTGTTTAAGCCTTACAGAGAACCTGGAAAGTGAGCTACACCTGGGACT
AGAAAACATCTTCACATGGTGGGAGGCTTGAATGCCAGTGATTTAAAGTG
TTCATTGTTTCCAGCTGCATGAAGAGAGTTGTTTTGTTTTGTTTTTCACT
TTCCTAGGAAAACAAATCAATTTTGGCTTGTAAAAGCACACAGGGTGCTG
GTAGGAAATGTGAACCAATTGATGGAAGCTATCCTGAAGGGTGGATAGAA
AGGGCCAAAACTCGCTTAGCGTAATACAAAAAATGTGAAAGCGCCTAACG
CTCCCAACCTCTTTTCCCATTGTTCCGTTATACAAAAATCGGGTCGCCGC
TTTATTCTTTTTTAATTTATCCCTCCTTTCCCCCCCTTCGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no387_g14.g1 MSMg01no387_g14.g1 CHROMAT_FILE:
MSMg01no387_g14.g1 PHD_FILE: MSMg01no387_g14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:30:27 2005
         (443 letters)



>mm_chr5_18463997_18464839
          Length = 843

 Score =  810 bits (419), Expect = 0.0
 Identities = 440/453 (97%), Gaps = 10/453 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttaggaccatgatgaagtcaagtctttccagatgagacaaatcttaaaatataacagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 cttaggaccatgatgaagtcaagtctttccagatgagacaaatcttaaaatataacagaa 410

                                                                       
Query: 61  agaaaataggatatgaattccaggcatccagaggcttcaagtagacaagtagggacatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 agaaaataggatatgaattccaggcatccagaggcttcaagtagacaagtagggacatgt 350

                                                                       
Query: 121 aatacaattctgatgtgtgtgtgctctgaagacagaaatttttattaataaacgtcctgg 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 349 aatacaattctgatgtgtgtgtgctctgaagacagaaatttttattaacaaacgtcctgg 290

                                                                       
Query: 181 aagatgggaaatacctcagcctctgagactgtaacaacaatttggtaagacttgttgaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 aagatgggaaatacctcagcctctgagactgtaacaacaatttggtaagacttgttgaaa 230

                                                                       
Query: 241 ctcctggtgaagcagaagagaaatgct----------gatgggagattgcttatcagaag 290
           |||||||||||||||||||||||||||          |||||||||||||||||||||||
Sbjct: 229 ctcctggtgaagcagaagagaaatgctgagcacttgcgatgggagattgcttatcagaag 170

                                                                       
Query: 291 cacgcatcagggtagacacaggaggcagaaaggttgtttaagccttacagagaacctgga 350
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| 
Sbjct: 169 cacgcatcagggtagacacaggaggcagaaaggttgtttaagcctgacagagaacctggc 110

                                                                       
Query: 351 aagtgagctacacctgggactagaaaacatcttcacatggtgggaggcttgaatgccagt 410
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 aagtgagctacacctgggactagaaaacatcttcacatggtgggaggcttgaatgccagt 50

                                            
Query: 411 gatttaaagtgttcattgtttccagctgcatga 443
           |||||||||||||||||||||||||||||||||
Sbjct: 49  gatttaaagtgttcattgtttccagctgcatga 17


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 843
Length adjustment: 10
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)