Query= MSMg01no388_b09.b1 MSMg01no388_b09.b1 CHROMAT_FILE:
MSMg01no388_b09.b1 PHD_FILE: MSMg01no388_b09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:20 2005
(440 letters)
>mm_chr5_48867700_48868539
Length = 840
Score = 714 bits (369), Expect = 0.0
Identities = 415/441 (94%), Gaps = 17/441 (3%)
Strand = Plus / Minus
Query: 1 ttgtgaggatggatgcaatag-aaaaaaatattatctacagattggcagtctcaaatttt 59
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 765 ttgtgaggatggatgcaatagaaaaaaaatattatctacagattggcagtctcaaatttt 706
Query: 60 actgcatattgtaatcatctggggaacattaaaatgtacaaattgttggggactctgctt 119
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 705 actgcatattgtaatcatctggggaactttaaaatgtacaaattgttggggactctgctt 646
Query: 120 ggcaattttgatgtaattgctttggaggaagcaagtctggaagatcaggatttatggaac 179
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 645 ggcaattttgatgtaattgctttggaggaagcaaggctggaagatgaggatttatggaac 586
Query: 180 tctttgtaattataaaaaacaggcaaaactgagaactgtggaatgaattcttactagaat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 tctttgtaattataaaaaacaggcaaaactgagaactgtggaatgaattcttactagaat 526
Query: 240 ctaaaaaattcgttttatcatataaaaacatttggacctaattggatgagtcttaaaata 299
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 525 ctaaaaagttcgttttatcatataaaaacatctggacctaattggatgagtcttaaaata 466
Query: 300 tcaaatatcaatgattgctgtggttacactagaatcctaccaggttttcagtgtgtgtgt 359
||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 465 tcaaatatcaatgatcgctgtggttacactagaatcccaccaggttttca---------- 416
Query: 360 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtanaattctta 419
||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 415 ------gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtagaattctta 362
Query: 420 tganacaaatgtatgtgctta 440
||| |||||||||||||||||
Sbjct: 361 tgagacaaatgtatgtgctta 341
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 71
Number of extensions: 26
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space: 358161
Effective search space used: 358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no388_b09.g1 MSMg01no388_b09.g1 CHROMAT_FILE:
MSMg01no388_b09.g1 PHD_FILE: MSMg01no388_b09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:20 2005
(591 letters)
>mm_chr5_48697484_48698474
Length = 991
Score = 1033 bits (534), Expect = 0.0
Identities = 576/594 (96%), Gaps = 10/594 (1%)
Strand = Plus / Plus
Query: 1 ctgtgtctcctagtttaatcaggtatacaaggctggaaatttaaagagcagtatctggca 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 ctgtgtctcctagtttaatcaggtatacaaggctgaaaatttaaagagcagtatctggca 260
Query: 61 gtttataccactgtatttgctggtaatatagacagcagttaagtcacaaattgactctac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtttataccactgtatttgctggtaatatagacagcagttaagtcacaaattgactctac 320
Query: 121 ttggtgattactaagccttgaaaccttattttcagggctattgatcttgaatatttagat 180
||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttg------cctaagccttgaaaccttattttcagggctattgatcttgaatatttagat 374
Query: 181 aatcttactacagattggactttttgcttctgttttaaaggaaaaaaaaagacatcatat 240
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 375 aatcttactacagattggactttttgcttctgttttaaagg-aaaaaaaagacatcataa 433
Query: 241 tgttttttacatgacaaatttttattcttcctgattataaagtcccaaaataaagttcta 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tggtttttacatgacaaatttttattcttcctgattataaagtcccaaaataaagttcta 493
Query: 301 tttctcttgcatttgagcagagttaattttccaggggtcacacttgatttgtcttccagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tttctcttgcatttgagcagagttaattttccaggggtcacacttgatttgtcttccagt 553
Query: 361 catgagcttttaatggagaaaaatcccacagccagataattattagcaaagcacataaat 420
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 554 catgagcttttaatggagaaaattcccacagccagataattattagcaaagcacataaat 613
Query: 421 taaaggcaatttttcatgttaaaaaaa-ctgcttctcacatataagtccttgacatagca 479
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 614 taaaggcaatttttcatgttaaaaaaaactgcttctcacgtataagtccttgacatagca 673
Query: 480 ctcttttaaataaaaaaaaaaca--ttctagagcttttatgacagaatttgatttttaaa 537
||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||
Sbjct: 674 ctcttttaaataaaaaaaaaaaaaattctagagtttttatgacagaatttgatttttaaa 733
Query: 538 aatgacaatatttaaagtattacatgcaaaatgtccatttgaaacttgaaagat 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 aatgacaatatttaaagtattacatgcaaaatgtccatttgaaacttgaaagat 787
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space: 569961
Effective search space used: 569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
