BAC Information

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BAC

Clone NameMSMg01-388D20
Chromosome5 (Build37)
Map Location 106,830,338 - 106,830,617
singlet/doubletsinglet
Overlap genenone
Upstream geneLrrc8b, Lrrc8c, Lrrc8d, LOC100042335, D830014E11Rik, LOC100042349, Zfp326, LOC626723, LOC546882, LOC671295, 4930458A03Rik
Downstream geneBarhl2, EG666892, LOC100042389, Zfp644, LOC100042400, EG666922, Hfm1, Cdc7, Tgfbr3, LOC666518, Brdt, LOC666535
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388D20.T7 (MSMg01no388_d20.b1)MSMg01-388D20.TJ (MSMg01no388_d20.g1)
ACCAG490782AG490783
length773736
length of high quality
(start - end)
576 (36 - 611)283 (315 - 597)
definitionCHROMAT_FILE: MSMg01no388_d20.b1 PHD_FILE: MSMg01no388_d20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:32 2005CHROMAT_FILE: MSMg01no388_d20.g1 PHD_FILE: MSMg01no388_d20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAACAA
CTCTTTTAAAGAAATACAGGAGAACACTGCTAAAGAGTTACAAGTCCTTA
AAGAAAAACAGGAAAACACTGCTAAAGAGTTACAAGTCCTTAAAGAAAAA
CAGGAAAACACAACCAAACAGGTAGAAGTCCTTATAGAAAAACAGGAAAA
CACATCCAAACAGGTGATGGAAATGAACAAAACCATACTAGACCTAAAAA
GGGAAGTAGACACAATAAAGAAAACCCAAAGTGAGGCGACGCTGGAGATA
GAAACCCTAGGAAAGAAATCTGGAACCATAGATGCCAGCATCAGCAACAG
AATACAAGAGATGGAAGAGAGAATCTCAGGTGCAGAAGACTCCATAGAGA
ACATCGGCACAACAATCAAAGAAAATGGAAAATGCAAAAAGATCCTAACT
CAAAACATCCAGGAAATCCAGGACACATTGAGAAGACCAAACCTACGGAT
AATAGGAGTGGATGAGAATGAAGATTTTCAACTCAAAGGACCAGCAAACA
TCTTCAACAAAATTATTGAAGAAAACTTCCCAAATCTAAAGAAAGAGATG
CCCATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTGGACCCAGA
AAGAAATTCCTCCCGACACATAATAATCCGAACACCAAATGGCCTTAATA
AAGATAGAATACTAAAAGCCGTAAGGGGAAAAAGGCCAGTGACATATAAA
GGGCAGGCCTATCTCATTACCCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXATTTCCTTCATGTGATTGATACTTAAAGGTGGTG
AGAGTCGTATATTTATGAGGTTCACGTGGCATGTGGACTCTCTAATGTCT
CCCCTGAGCAGTCTCTCTCATGATGAGAGAAAAGAGCAGCAAAGACTTCG
CTCTTAACTTAGGCTAATGATGCTTTCTGGACTTGGTGTTTACTGTGTTC
GAGATGTTAGATTTGATGTTTAAAGAGTTCTGCGTTGGATTAAATTTCAA
ATGCTAGACTTTATGACTTTTTTTTTCTCCCCAAAACAGCAAAGCTGTTT
CATTAATAGTTCATGGAAACGTACCTCTTGAAAAGCTGTTCTGATGTGTT
TTAGAACCTACTGTGGGTTATTCAACACTGTGCCGCTTAGGCTCTGACAG
AATGTTGAAGTCTGTTTTGTTTTCTGGTTTGGACCAGGGAGGAACCTTGG
CAGAATGTCTCCTGATTGAAATGTACATATGACTTGCAGAGGTGTGGATG
GCTAGCATTTCTGATGTAGCATGTAGCCCTGGGGTTGAGGGAGCTTTGCT
GGATTCCAAGGTACATTACAGGTGAGTAAGGAGAGGGAGTGTCAGTCTTT
GATAGGCTGCCCTGGTTCTGCAGTTCTTGTAGGCTTAACCTCATTTACCC
CGCCTGGGTGAAATTAAATAAAAAGCACCCTTTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_d20.g1 MSMg01no388_d20.g1 CHROMAT_FILE:
MSMg01no388_d20.g1 PHD_FILE: MSMg01no388_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:32 2005
         (283 letters)



>mm_chr5_106830135_106830817
          Length = 683

 Score =  534 bits (276), Expect = e-156
 Identities = 279/280 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   tttttttttctccccaaaacagcaaagctgtttcattaatagttcatggaaacgtacctc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 tttttttttctccccaaaacagcaaagctgtttcattaatagttcatggaaacgtacctc 424

                                                                       
Query: 64  ttgaaaagctgttctgatgtgttttagaacctactgtgggttattcaacactgtgccgct 123
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 423 ttgaaaagctgttctgatgtgttttagaatctactgtgggttattcaacactgtgccgct 364

                                                                       
Query: 124 taggctctgacagaatgttgaagtctgttttgttttctggtttggaccagggaggaacct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 taggctctgacagaatgttgaagtctgttttgttttctggtttggaccagggaggaacct 304

                                                                       
Query: 184 tggcagaatgtctcctgattgaaatgtacatatgacttgcagaggtgtggatggctagca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tggcagaatgtctcctgattgaaatgtacatatgacttgcagaggtgtggatggctagca 244

                                                   
Query: 244 tttctgatgtagcatgtagccctggggttgagggagcttt 283
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 tttctgatgtagcatgtagccctggggttgagggagcttt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)