BAC Information

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BAC

Clone NameMSMg01-388E05
Chromosome5 (Build37)
Map Location 111,163,773 - 111,385,373
singlet/doubletdoublet
Overlap geneEp400, Pus1, Ulk1, Hscb, Chek2, Ttc28
Upstream geneLOC100041734, LOC100042749, LOC667198, 4930522L14Rik, LOC667243, Plcxd1, Gtpbp6, LOC675812, Chfr, Golga3, D5Ertd585e, Pgam5, Pxmp2, Pole, P2rx2, Gm1679, 2410025L10Rik, Galnt9, Noc4l, Ddx51
Downstream genePitpnb, Mn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388E05.T7 (MSMg01no388_e05.b1)MSMg01-388E05.TJ (MSMg01no388_e05.g1)
ACCAG490800AG490801
length765759
length of high quality
(start - end)		458 (55 - 512)508 (82 - 589)
definitionCHROMAT_FILE: MSMg01no388_e05.b1 PHD_FILE: MSMg01no388_e05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:33 2005CHROMAT_FILE: MSMg01no388_e05.g1 PHD_FILE: MSMg01no388_e05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,384,912 - 111,385,373)(111,163,773 - 111,164,280)
sequence
GCGGCGCTAAACGACTCCTATTTCCAGAGGTCCGCGGAATTCACTCTCTC
ACGACACCTGGGATGGTCTTTTGCAAGCAGGTAGACCTCATCTTCTGAGG
CAGGTGATTGGTTCTGAGGAAAACTCCACATAACAGCTACTGCTGACTTA
GCAGAACCAACAAAATGACTTGGCAGAAATAAAACTGGAGCCAGTGGGGA
AAGTTGAGATATACACAATGTATCACTTCAAGTTTTTTCCAAAGCTTGGA
AGTGGCAAGACTAAGAGTATTTGATATTTGGAATGAAGGTCAGGCTTACA
CAGAAAGAAAATAAAATAGAAGTCCTTGCAAAAAAAAAAAAAAAAGTTAA
CACTCCTAGAAGACTAGTCATTCCTTGGCAGTGTTATAGAGATACTGACC
AGTGAAAACCCAACCTGGCACTTGAAAAGTGGAGGAGACTCAGCTTATTC
ATGAGGACTTGGAACCAAGCTAAGGCTTTGCATAAGTACAGTCACATCCT
AGTTTCTCACCAACTGTAGACTGAATAACAATATTGAAACCTCTGTCTAT
ATATAGGGTATATATAGACAGGGTAGCCTTTGGGCTCCCGACCCATCACG
GAGATTGCCATCACAATTCGACCAAGGCCTTTGATGAAGTTACAGGTTGC
CCGCTTGACCTCCATAACGAAGGACGATCCCAAAACCAAGGCCCTACCTG
TGAACCCGGAAGTTGGAAAAAACAGGTTTCTAACCCACATCCGGACATAA
AATCCTTCCCCCGAG

CCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTTTAAAATGACCAAAAA
ATAGAAGAATCAATGAAGACTGACTACATAGCTCAAACCAAACCAGGTAA
TGAACACTGAGTTTATACCAATCTAATGTAATGTATTCTTTTAAATCCTT
TGAGGAAGCTAAACAAAACACTCAGCCAACAAAACCTAAGTATCAAGTAC
CAAGTATTGGGCAGCAACTGCCTCTTGAGGATGGGTGCTCCAGTCCTGCC
TGAGTCCTACCCTTTAGCCATGACTGTAAGGAAATCAGCCTACCATGGTC
AAGATTCACCACAAGGCAAACACGTCCATGAGTATACTTCTAGCAGAAAA
GGCTACATTATCTGGTACCAGTCATGGTTTCTAGTGATAATAAACCAAGT
GTTTAAACTATCACGGCCTTAAAATAATGAAATAGATGTCACAAACCAGA
ACACTAGCAAGTCCCAACTGTGTTATACAGTGACATACCTTCCTTGTTTT
GTTCAGTTACTCTCTTGGCCAGGTTGGGAGCAAGATCCCCCAAGCTCAGG
AACTAGAGGATAGCCTAGGAAATAAGGAGATCCCCAAACCAAACAAATAT
GTTCCATATTTGCCTATGTATACTTACCAGNGCTATTTGTTCTGCCAGTT
TATCCTGAGAACCGCCCTTGGATGAGGCTGCATCCTGAACAGCACCCTGT
GGCTTACAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_e05.b1 MSMg01no388_e05.b1 CHROMAT_FILE:
MSMg01no388_e05.b1 PHD_FILE: MSMg01no388_e05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:33 2005
         (458 letters)



>mm_chr5_111384712_111385573
          Length = 862

 Score =  820 bits (424), Expect = 0.0
 Identities = 451/462 (97%), Gaps = 4/462 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacctgggatggtcttttgcaagcaggtagacctcatcttctgaggcaggtgattggttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 662 cacctgggatggtcttttgcaagcaggtagacctcatcttctgaggcaggtgattagttc 603

                                                                       
Query: 61  tgaggaaaactccacataacagctactgctgacttagcagaaccaacaaaatgacttggc 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 tgaggaaaactccgcataacagctactgctgacttagcagaaccaacaaaatgacttggc 543

                                                                       
Query: 121 agaaataaaactggagccagtggggaaagttgagatatacacaatgtatcacttcaagtt 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 542 agaaataaaactggagccagtggggaaagttgagatatacgcaatgtatcacttcaagtt 483

                                                                       
Query: 181 ttttccaaagcttggaagtggcaagactaagagtatttgatatttggaatgaaggtcagg 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 482 ttttccaaagcttggaagtggcaagactaagtgtatttgatatttggaatgaaggtcagg 423

                                                                       
Query: 241 cttacacagaaagaaaataaaatagaagtccttgc----aaaaaaaaaaaaaaaagttaa 296
           ||||||||| ||||| |||||||||||||||||||    |||||||||||||||||||||
Sbjct: 422 cttacacaggaagaagataaaatagaagtccttgcaaaaaaaaaaaaaaaaaaaagttaa 363

                                                                       
Query: 297 cactcctagaagactagtcattccttggcagtgttatagagatactgaccagtgaaaacc 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 cactcctagaagactagtcattccttggcagtgttatagagatactgaccagtgaaaacc 303

                                                                       
Query: 357 caacctggcacttgaaaagtggaggagactcagcttattcatgaggacttggaaccaagc 416
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 302 caacctggcacttgaaaagtggaggagactcagcttattcatgaggtcttggaaccaagc 243

                                                     
Query: 417 taaggctttgcataagtacagtcacatcctagtttctcacca 458
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 taaggctttgcataagtacagtcacatcctagtttctcacca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 862
Length adjustment: 10
Effective length of query: 448
Effective length of database: 852
Effective search space:   381696
Effective search space used:   381696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no388_e05.g1 MSMg01no388_e05.g1 CHROMAT_FILE:
MSMg01no388_e05.g1 PHD_FILE: MSMg01no388_e05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:34 2005
         (508 letters)



>mm_chr5_111163573_111164480
          Length = 908

 Score =  975 bits (504), Expect = 0.0
 Identities = 507/508 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actttaaaatgaccaaaaaatagaagaatcaatgaagactgactacatagctcaaaccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actttaaaatgaccaaaaaatagaagaatcaatgaagactgactacatagctcaaaccaa 260

                                                                       
Query: 61  accaggtaatgaacactgagtttataccaatctaatgtaatgtattcttttaaatccttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accaggtaatgaacactgagtttataccaatctaatgtaatgtattcttttaaatccttt 320

                                                                       
Query: 121 gaggaagctaaacaaaacactcagccaacaaaacctaagtatcaagtaccaagtattggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaggaagctaaacaaaacactcagccaacaaaacctaagtatcaagtaccaagtattggg 380

                                                                       
Query: 181 cagcaactgcctcttgaggatgggtgctccagtcctgcctgagtcctaccctttagccat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagcaactgcctcttgaggatgggtgctccagtcctgcctgagtcctaccctttagccat 440

                                                                       
Query: 241 gactgtaaggaaatcagcctaccatggtcaagattcaccacaaggcaaacacgtccatga 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gactggaaggaaatcagcctaccatggtcaagattcaccacaaggcaaacacgtccatga 500

                                                                       
Query: 301 gtatacttctagcagaaaaggctacattatctggtaccagtcatggtttctagtgataat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtatacttctagcagaaaaggctacattatctggtaccagtcatggtttctagtgataat 560

                                                                       
Query: 361 aaaccaagtgtttaaactatcacggccttaaaataatgaaatagatgtcacaaaccagaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaccaagtgtttaaactatcacggccttaaaataatgaaatagatgtcacaaaccagaa 620

                                                                       
Query: 421 cactagcaagtcccaactgtgttatacagtgacataccttccttgttttgttcagttact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cactagcaagtcccaactgtgttatacagtgacataccttccttgttttgttcagttact 680

                                       
Query: 481 ctcttggccaggttgggagcaagatccc 508
           ||||||||||||||||||||||||||||
Sbjct: 681 ctcttggccaggttgggagcaagatccc 708


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space:   447204
Effective search space used:   447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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