Query= MSMg01no388_g20.b1 MSMg01no388_g20.b1 CHROMAT_FILE:
MSMg01no388_g20.b1 PHD_FILE: MSMg01no388_g20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:46 2005
(189 letters)
>mm_chr5_29791624_29792212
Length = 589
Score = 207 bits (107), Expect = 3e-58
Identities = 119/123 (96%)
Strand = Plus / Minus
Query: 1 aacctctaaggacaagaaaggagcttctatttttggttcacagtggatctggctgaactg 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 323 aacctctaaggacaagaaaggagcttccatttttggttcacagtggatctggctgaactg 264
Query: 61 tacagcatacgtggttggaaaagagaatattgagaaacaacatattctgttactggtaac 120
|||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 263 tacagcatgcatggttggaaaagagaacattgagaaacaacatattctgttactggtaac 204
Query: 121 tgg 123
|||
Sbjct: 203 tgg 201
Score = 95.5 bits (49), Expect = 2e-24
Identities = 49/49 (100%)
Strand = Plus / Minus
Query: 126 gagagagagagagagagagagagagagagagagagagagagagagagag 174
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 gagagagagagagagagagagagagagagagagagagagagagagagag 46
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 62
Number of extensions: 34
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 5
Length of query: 189
Length of database: 589
Length adjustment: 8
Effective length of query: 181
Effective length of database: 581
Effective search space: 105161
Effective search space used: 105161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no388_g20.g1 MSMg01no388_g20.g1 CHROMAT_FILE:
MSMg01no388_g20.g1 PHD_FILE: MSMg01no388_g20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:46 2005
(394 letters)
>mm_chr5_29597147_29597940
Length = 794
Score = 723 bits (374), Expect = 0.0
Identities = 389/394 (98%)
Strand = Plus / Plus
Query: 1 taagttattatggtggttttcccgtggaatttcctgacgccctaggtttatgattctctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taagttattatggtggttttcccgtggaatttcctgacgccctaggtttatgattctctc 260
Query: 61 tgttctcacccatgggatggcatgtactcatcaggatgctttccactaagtctcaaaatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttctcacccatgggatggcatgtactcatcaggatgctttccactaagtctcaaaatc 320
Query: 121 aaagaaattttaaaaataaggaaatagtttcaaataattagaagttaggagccagagcca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagaaattttaaaaataaggaaatagtttcaaataattagaagttaggagccagagcca 380
Query: 181 gagccagagtaagcttccgcatggttttccagcagctcaacagtgacatcaagggactaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagccagagtaagcttccgcatggttttccagcagctcaacagtgacatcaagggactaa 440
Query: 241 tctgtgtctcccacacactagattgatgtgtacagactggcactttccctccgtgcaggg 300
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actgtgcctcccacacactagattgatgtgtacagactggcactttccctccgtgcaggg 500
Query: 301 caaatgtgtggactgttcctgcgtattccagtgcttacccccacacttgtgtcactccta 360
||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 501 caaatgtgtggactgttcctgcgtattccagtgcttaccttctcacttgtgtcactccta 560
Query: 361 ctgagtcagcctgctagtctgtaaagcattccgt 394
||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgagtcagcctgctagtctgtaaagcattccgt 594
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 794
Length adjustment: 9
Effective length of query: 385
Effective length of database: 785
Effective search space: 302225
Effective search space used: 302225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
