BAC Information

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BAC

Clone NameMSMg01-388H20
Chromosome5 (Build37)
Map Location 5,068,607 - 5,069,121
singlet/doubletsinglet
Overlap genePftk1
Upstream geneAkap9, Cyp51, ENSMUSG00000053178, LOC100041073, Fzd1, LOC667678
Downstream gene1700015F17Rik, Cldn12, Gtpbp10, LOC667699, EG667705, A330021E22Rik, Steap2, Steap1, LOC727711, LOC546854
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-388H20.T7 (MSMg01no388_h20.b1)MSMg01-388H20.TJ (MSMg01no388_h20.g1)
ACCAG490973AG490974
length768748
length of high quality
(start - end)
509 (37 - 545)515 (69 - 583)
definitionCHROMAT_FILE: MSMg01no388_h20.b1 PHD_FILE: MSMg01no388_h20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:50 2005CHROMAT_FILE: MSMg01no388_h20.g1 PHD_FILE: MSMg01no388_h20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:31:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTGA
TCTTTCCAAACTTTTATCATGAATGGGTGTTGGATCTTGTCAAATGCTTT
TTCTGCATCTAACGAGATGATCATGTGGTTTTTGTCTTTGAGTTTGTTTA
TATAATGGATTACATTGATGGATTTTCGTATATTAAACCATCCCTGCATC
CCTGGAATAAAACCTACTTGGTCAGGATGGATGATTGCTTTAATGTGTTC
TTGGATTCGGTTAGCGAGAATTTTATTGAGGATTTTTGCATCGATATTCA
TAAGAGAAATTGGTCTGAAGTTCTCTATCTTTGTTGAATCTTTCTGTGGT
TTAGGTATCAGAGTAATTGTGGCTTCATAGAATGAGTTGGGTAGAGTACC
TTCTACTTCTATTTTGTGAAATAGTTTGTGCAGAATTGGAATTAGATCTT
CTTTGAAGGTCTGATAGAACTCTGCACTAAACCCATCTGGTCCTGGGCTT
TTTTTGGTTGGGAGACTATTAATAACTGCTTCTATTTCTTTAGGTGATAT
GGGACTGTTTAGATGGTCAACTTGATCCTGATTCCACTTTTGGACCTGGT
ATCTGTCCCGAAATTTGTCCCTTTTCGCCCAGGTTTTCCCGTTTTTGTTG
AGCAATACCTTTTTGCACAACACCCTGACTGCGCTTTTGGACCTCTTTTC
CTATCTCTTTCTAATGTCCTCCCCCTTTCCTCCTCCAGTCTGCCCAACAA
ACCACTCTTCCTCCCCCG
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTGGGTCTCAATGTATTTATTTTAAAATGTGTG
TGGGTTACAAAGTTGTTAAAAGAATTTTAAAAGTTGGTACCCGTAATTCA
TAACAGTTTCTGGGTTAAAATATAAACTTTCTGTTAATTAGTTAGCCTAT
TATATAATTAAAATTTATATTTAGTTCAATTTAATGTTTTTCTGATCATT
GTTTCCATACATAACAATTTTTCACATTTTCTCCATTTCATTTACTATTT
CTGCTGCATCTCTTTCTATAGTGATATACTGTTCTTTTATTTGTTTTGTT
TTATTTCCTTTCTGCTCTGTGAGACATGATGTTATAAGTATATTTTGGTT
TCCATCACCGACCTTTAATGACTTCTCAGACCTTGGTAATGCATAGAGTC
ATTGGTTAGTTCAGCAGGTTTGCAGCTTGGACGAGACATGGCTACACAAA
GCAGAGGCACCTTCTTTTGCTCTGGCTGTATGACCGTTCTCCAGCCTTGG
CATCACTCTGAATATCAGTTAACACATTTTACAGAGATGCCCCTGAGGGC
TAATGAGCATTGCCCATATGTTTAACTTTTAAATTATTATCTTTTCTATT
ATGGAGAGACACCGAGAGACTTAGACTATAGACTTACAATATTGAGACTT
TTTCTTAACGGTATTACTTGGGTAGGGAAATTTTTTTAAAAAGTTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no388_h20.g1 MSMg01no388_h20.g1 CHROMAT_FILE:
MSMg01no388_h20.g1 PHD_FILE: MSMg01no388_h20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:31:50 2005
         (515 letters)



>mm_chr5_5068252_5069166
          Length = 915

 Score =  942 bits (487), Expect = 0.0
 Identities = 508/515 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgggtctcaatgtatttattttaaaatgtgtgtgggttacaaagttgttaaaagaatttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 tgggtctcaatgtatttattttaaaatgtgtgtgggttacaaagttgttaaaagaatttt 811

                                                                       
Query: 61  aaaagttggtacccgtaattcataacagtttctgggttaaaatataaactttctgttaat 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 810 aaaagttggtacccgtaattcataacagtttctgggttaaaatataaactgtctgttaat 751

                                                                       
Query: 121 tagttagcctattatataattaaaatttatatttagttcaatttaatgtttttctgatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 tagttagcctattatataattaaaatttatatttagttcaatttaatgtttttctgatca 691

                                                                       
Query: 181 ttgtttccatacataacaatttttcacattttctccatttcatttactatttctgctgca 240
           || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 ttctttccatacataacagtttttcacattttctccatttcatttactatttctgctgca 631

                                                                       
Query: 241 tctctttctatagtgatatactgttcttttatttgttttgttttatttcctttctgctct 300
           |||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 tctctgcctagagtgatatactgttcttttatttgttttgttttatttcctttctgctct 571

                                                                       
Query: 301 gtgagacatgatgttataagtatattttggtttccatcaccgacctttaatgacttctca 360
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 570 gtgagacatgatgttataagtatattttggtttccatcactgacctttaatgacttctca 511

                                                                       
Query: 361 gaccttggtaatgcatagagtcattggttagttcagcaggtttgcagcttggacgagaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gaccttggtaatgcatagagtcattggttagttcagcaggtttgcagcttggacgagaca 451

                                                                       
Query: 421 tggctacacaaagcagaggcaccttcttttgctctggctgtatgaccgttctccagcctt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tggctacacaaagcagaggcaccttcttttgctctggctgtatgaccgttctccagcctt 391

                                              
Query: 481 ggcatcactctgaatatcagttaacacattttaca 515
           |||||||||||||||||||||||||||||||||||
Sbjct: 390 ggcatcactctgaatatcagttaacacattttaca 356


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space:   457025
Effective search space used:   457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)